G1792968


Basic Information

Item Value
gene id G1792968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25665059 ~ 25700870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2052110
GAGTTGGTGTgtgttctaaaacttttgaccggtagtgtaataCAGACTGGGGCTAAAGATGGATgtgttggcaaactccaagttgaTCCATTCAGAAGGCACCAGGCTGGCCGTACAAACCCAGGAGCGGCAGCCCAAAATGGGGGAAACTGTGGAGGATTGTCTGGTGTACAGCTCCAAGAGCATCACAGGAAGAGAGACCTTGGGGTGTGTAAGCTCACTGGGAGTGGGTTAGGTGGATCTTGAGAGCTTCCGCATATTGGACTGAGCTTTAAGATTGTGACCGTTGGGAGAACTGATGTTTTTTGTTAGAGCAATAAGAGCCTGGCCAAGCTTGAAACATGGACATGATAACTGTGATCAAATATTGATCTTGATGCAAAAGAGAAATACACCTTTTAAATCACAATTTGGGAAAGCCTTGAAATAACAGATAATTGCACATTGTATGTTTTGATGTTTTATAGATCAGAGAATTACAGTAGATCTTTCTTTAAAGTCTAAGAATAGTGTACATTAAGCTTGCATATTCAGTGTGCCAAAAACTGTCCCACTGTATACCCAGCTGCTGATTATAATAATACAAACATGTACATGCTTGCAAATGGAACACACAGAGACGcgcacacgcccacacacacacactgctgtcagAGGAGGTAAAAACCCTACATTCAGGGGTCTGACCAAAGAGTGTTGTCCCCTGATCCCTGCGATCCAGTGACGGAGGCTATCTGCAGCAGTTTGGAAAGTGAAATTGGGACACAGATCTCTGCAATGCAATCCATTGTGCACTATATCAGCTTCAAATATAGCAGGAGCAACTGTTTTCTCTGTGTTTAATCCTGATTGCAgacactgcattcggaaagtattcagaccccttacatttcttccacattttgttgcgttacagccttgttctaaaatggattaaattgtttttccccctcatcaatctatgcacaataccccataatgacaaagcaaaaacaggtttttcaaagTTTTTGCAACCATTTTATttaatgaaatattacatttcagACCTTTTtattattcaggccctttactcagtactttgttgaagcacctttggatgcgattacagcttcaagtcttcttggatatgatgctaaaagcttggcacacttgtatttggggagcttctttcattcttctctgcagatactctcaatctctggcaggttggatggggaacatcgctgcacagctattttcaggactcttcagagatgttcgatcgggttcaagtctgggctctggctgggccactcaaggacatttagagacttgtcccgaaaccaatcctgcgttatcttggctttgtgtttagggtctttgtcctgttggaaggagaaccttcaccgcagtctgaggttctgagcgctctggagcagcttttcttcaaggatctgtctgtactttgttccgttcatctatccctcgaccctgactagtctcccagtcgtccctgtcactgaaaaacatccccacagcatgatgtggccaccaccatgcttcactgtagtgatggtgccaggttacctCCAGTGACACTTCAGGCCAAAGAGAATCTCATGGTCTTAGAGTcttttaggtggcttttggcaaactctaagcgggctgtcatgtgccttttactgaggagtggcctccATCtggctctaccataaaggcctgattggtggagtgctgcagagatggttgcccttctgaaaggttctcccatatccacagaggaactctggagctctgtcagagtgaccatcgggttcttggtcacctccctgaccaaggcccttcttccccgattcctcagtttggcctggcagcaagctctaggaagagtcttggtggttccaaacttcttccatttaagaatgatggaggccactgtgtttttggggacctttaatgctgcagaaatgttttggtacccttccccagatctgtgcctcgacacaatcctgtcttggagctctagggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggacattatataaacaggtgtgtgcctttccaaatcatgtccaatcaatttaatttatcataggtggactccaatcaagttgtagaatcatctcaaggatgatcaatggaaacaggatgcacctgagctaaattttgtcatagcatagcaaagggtctgaatacttatgtaaatgagtgtTTTATTATTTAGAAATTTGCcagaatttctaaaaacctgttttcgcattgtcattatggggtattgtatgtagattgatgagggaaagaaAATatgtaatgcattttagaataaggctgaaacgtatcaaaatgtggaaaaagtcaagaagtctgaatactttccgaatgcaccgtatacaGTAACATAGCACAAGCATTATCTTCCCGTCAGAAATCAGAACAAGGGACAGCTgtgcaaaaaaaagtgttttgtccATTCAACAGACTCCAATCATTACAGAGGGTTTTATGCGCTCAGGATCAGATAGTGAGGAACTATGCAAAAGTAATCAAGTGCCTATGAAAAGTGAATTCACAAAAGGATCAAAGTCCCAAACGTTCAGCTCCATGTTAGATTTGAGAAAATGTCCTGATGTGAAAGAACAGTGTGTTCAAAAGCCATATATGAAAACAAATCATTTAGCTTGAATCAAGGCAAGGCACAAGCTTGAAAAGTTGATTGTCCTTCAGTATATCTgcatgtttcattttttttttttttacccacgaGGTGGAGACATTTCCCCTTGAGCCTTTAAAATACAGTGTAATTCCTTTCTTACAACAAAATTACAGGTATCTTCCAAAATGTGtggggccaccacgagccagaacagcttcaatgcacctcatcatagattctacaagtgtctggaactctgttGGAGGGATGCTACACCCTTCTTTCACAAGAAATTCcatgatttggtgttttgttgatggtggtagaaaacACTGTTTCAggcactgctccagaatctcccataagtgttcaattgggttgagatctggtgacgaAGACGCCATGGCAAATGGTTTACAtaattttcatgctcatcaaaccatttgtgaCTTCTGGATGGGGTCATTGTCAGgaggcatagccatggtagccaaaataattccctgcccagcatttttatacttGACCATAAggatgatgggatgttaattgcttaaacTCAGGAACAACACCTGTGTGGaaacacctgctttcaatatactttgtatcaatcatttacatttacattatttTGTCAGTTATCTATACTTTAATGTGACTGTGTGAAACAGTTGATTGATTGTCACATTGGTAGCTATCTATCTCTTGGCAGTACATGTATTTTCATATTTGTttaaatgtgatttatttttgtTTAAATGTGAGGCTAGTCAGAAAATAACATGTCTAGGCCTGGAGGCTACTAAAGAAGGCATAGCCACAACCTGTGAAGTTCTAAACTGATTTTGCACTAGGCTTTTGGGGTTTTGGAATATACAGCCCCCTTTATAATATCAtgaatcatattttatttttctatAGAGTAGAGGAACCTCTTTTGGGATGCCAACAGACTGGTTGCCGTTTCTCTGTGCACATTTCAATGTCATGTTGTCATTCTGTTCCTGTAAAGCCTGCAATAAAATAAAACTAATCTGT

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2052110 True 3728 lncRNA 0.42 2 25665059 25700870

Neighbor

gene id symbol gene type direction distance location
LOC110501624 LOC106582115 coding upstream 13796 25619178 ~ 25651263 (+)
LOC110502118 LOC106582051 coding upstream 77372 25564668 ~ 25587687 (+)
LOC118943581 NA coding upstream 257318 25401479 ~ 25407741 (+)
cfap91 maats1 coding upstream 331202 25325231 ~ 25333857 (+)
LOC110501614 ox2g coding upstream 441583 25193435 ~ 25223476 (+)
LOC110501629 ppa6 coding downstream 2026 25702896 ~ 25708893 (+)
LOC110501634 LOC106582107 coding downstream 206973 25907843 ~ 25914106 (+)
LOC110501637 LOC106582050 coding downstream 222562 25923432 ~ 25926978 (+)
LOC100301670 LOC100301670 coding downstream 233108 25933978 ~ 25940120 (+)
LOC110502075 NA coding downstream 330617 26031487 ~ 26035739 (+)
G1793021 NA non-coding upstream 2846 25661983 ~ 25662213 (+)
G1793018 NA non-coding upstream 5641 25659194 ~ 25659418 (+)
G1793014 NA non-coding upstream 12154 25652367 ~ 25652905 (+)
G1792979 NA non-coding upstream 20188 25601801 ~ 25644871 (+)
G1792941 NA non-coding upstream 118985 25545871 ~ 25546074 (+)
G1792971 NA non-coding downstream 8781 25709651 ~ 25710486 (+)
G1793046 NA non-coding downstream 31482 25732352 ~ 25732634 (+)
G1793047 NA non-coding downstream 31802 25732672 ~ 25732941 (+)
G1793048 NA non-coding downstream 32191 25733061 ~ 25733459 (+)
G1793049 NA non-coding downstream 33123 25733993 ~ 25735814 (+)
G1792649 NA other upstream 368502 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 651404 24848514 ~ 25013655 (+)
G1792040 NA other upstream 821774 24842942 ~ 24843285 (+)
LOC110501605 LOC106582130 other upstream 1254346 24394068 ~ 24423067 (+)
G1790805 NA other upstream 1545584 24118562 ~ 24119475 (+)
G1793045 NA other downstream 30456 25731326 ~ 25731754 (+)
G1793717 NA other downstream 614956 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2202712 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2336058 28036917 ~ 28052019 (+)
G1795550 NA other downstream 2390695 28091565 ~ 28092116 (+)

Expression


Co-expression Network