G1793121 (LOC106582109)


Basic Information

Item Value
gene id G1793121
gene name LOC106582109
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25843303 ~ 25845963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2052273
gttttgttgtatTTAACTGACTAAAATGCTATTATCTAGGTAATTTCTTTAGTAGATGTCAGAGGTCAGCTTGTGGGACAAGTCAGGGGTGCTTTTAGTTCGATGGAACAATTGCTACGTTGCGGAACAGTTTGTACTGAACTACATGTTTCCCCAAAATGTTCTGGAACAGACTTTGAGGTACGTTTGCTCCATTTGGTGGGTGTAACTGGACACTCCTTGGAGTGTTGAAGAATAACTTAATTTATCTGTTTATTCATGAACCAATTGATATTAATTTAAAAGAGAGACGCTGGTATTGACCCGGAACACAAACACCTGCCTCCCTAGATTATTAATTTTtttcccacctttatttaaccagacaagacagttaagaacacattcttattttcaatgacggcctaggcacagtgggttaactgccttgtttagtggcagagcgacagatttttacctcgtcagctcggtgattcgatctcgcaacctttcggttacaagtccaacgctctaaccactaggctacctgccgccccaactgcCATTCCAGTTTGTGTCAGTTAATTCTAGATTATTTTAGAGTATCTCAAAATGTAGAATATCCTATATAGACGTGTTAAATCTCAACCAAGTAAGGTAAACAATTCAAAATTCAAAAGAACATCCCAAAAGATGACCATTTAGCTGGCATATGCCTACAATACAACATCGCTTTCAGTGGTTGTGCCCATTCTACACATTCAATTTCTATGGTTCTAGTTCTCATTTCCTCTACGTTCTAAGATCTAGATCCTTGGTGGAGTACTAACTCTCCATGGAGTCTAGGAACTCTTCCTCAGTGATGTGCTCCAGTCTCTTCAGGACTTGGTCAGCGTTGGCTAGAGGGTAGTCTGTCACAGGGTAATCTGGAGGGCTGCTGGGTGAAGTGCCCTGGAAGGAACAGCAGAGTGTATGGAGGAAGGGAGCAAGCTGGGTGATGGAGGTGAGAAAGCGACGGGTGAGGAGGGGGAACTCCAGATGCTCCGTAGAGGACTCCTCGCTCAGCCCGTTCAGCA

Function

NR:

description
protein dopey-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2052273 True 1055 lncRNA 0.43 2 25843303 25845963

Neighbor

gene id symbol gene type direction distance location
LOC110501629 ppa6 coding upstream 134410 25702896 ~ 25708893 (+)
LOC110501626 LOC106582114 coding upstream 147572 25676037 ~ 25695731 (+)
LOC110501624 LOC106582115 coding upstream 192040 25619178 ~ 25651263 (+)
LOC110502118 LOC106582051 coding upstream 255616 25564668 ~ 25587687 (+)
LOC118943581 NA coding upstream 435562 25401479 ~ 25407741 (+)
LOC110501634 LOC106582107 coding downstream 61880 25907843 ~ 25914106 (+)
LOC110501637 LOC106582050 coding downstream 77469 25923432 ~ 25926978 (+)
LOC100301670 LOC100301670 coding downstream 88015 25933978 ~ 25940120 (+)
LOC110502075 NA coding downstream 185524 26031487 ~ 26035739 (+)
LOC110501640 LOC106582103 coding downstream 208067 26054030 ~ 26062493 (+)
G1793065 NA non-coding upstream 34039 25808430 ~ 25809264 (+)
G1793063 NA non-coding upstream 36651 25806477 ~ 25806652 (+)
G1793053 NA non-coding upstream 75541 25744287 ~ 25767762 (+)
G1793052 NA non-coding upstream 99055 25743896 ~ 25744248 (+)
G1793050 NA non-coding upstream 105789 25737190 ~ 25737514 (+)
G1793136 NA non-coding downstream 26726 25872689 ~ 25909831 (+)
G1793142 LOC100194724 non-coding downstream 51797 25897760 ~ 25904054 (+)
G1793174 NA non-coding downstream 94280 25940243 ~ 25953741 (+)
G1793183 NA non-coding downstream 108048 25954011 ~ 25954252 (+)
G1793201 NA non-coding downstream 135626 25981589 ~ 26000950 (+)
G1793045 NA other upstream 111549 25731326 ~ 25731754 (+)
G1792649 NA other upstream 546746 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 829648 24848514 ~ 25013655 (+)
G1792040 NA other upstream 1000018 24842942 ~ 24843285 (+)
LOC110501605 LOC106582130 other upstream 1432590 24394068 ~ 24423067 (+)
G1793717 NA other downstream 469863 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2057619 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2190965 28036917 ~ 28052019 (+)
G1795550 NA other downstream 2245602 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 3131927 28977890 ~ 28984226 (+)

Expression


Co-expression Network