G1793142 (LOC100194724)


Basic Information

Item Value
gene id G1793142
gene name LOC100194724
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25897760 ~ 25904054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2052304
TTTGTATGTTACAGAATATTTTATTACGAACACAACTAGACAGGATTTTAGCGGACATAGCGCTGTATAGGTGGCAGGAAGCAGAGAAACATTCCCATGACTCTCTGGAATGGACAATGGACTTAACTATCTCTGATGATCTTGGTCAGTTTGTGGATCTTTGTCTTGGTGGACATGTCCACATACTTATCTCCTATGCTGACAATCATACCACCCAGGATGGAGGCATCAGACTTGGTCTCTAATATGAGTGTTTCTCCCTTTGCCAGGAAGCCGTTCAGAGCCACCTTCAGCTCTGCCAGGTTAGCCTCATCCAGGGATGTGCGGTGGTGACAGTGCAGATGACCTCGCCACGGTGAGCGCTCATCATTTTCGCAAAGGCGCCAACTACATCTGCGGTCAGGGTCAGACGGCCATTATCTGCCAACAcagTGAGGTTAACTGATATTGGGGAGAGATTTGCCTTCGTCATGGCATCACCAAAGAACTTCAGCTTGAGGCTGCGCTTGACATGAGGGTTCATCACAATACTGGACAGCTTGGGGTCCTTGATCAGAGCCGACAAcgtcctcatctccttctctacTTGTTCCAGTTTCTTCTGCTTgctggcagcagagaacagggCTGTGGCATAGCGACCTCCGACCCCATACACGTCGATAGGGGGCCTGATCAATGCTTGTCGGAGAACCGACGTGCTGAATTGACGCACCTGAAAAAGGATAGAGATGATAAAGGAAATGATTAATATATAACAGTGACGTCTGGAGTGGAGTAGCTGTTAGTTAGCAAGCTATCAAAATCGTTTTGAACTAGCAAAAATCTTGACCACATGTTCCACAATGTCATGCGCCTGTCTTATGGACAACAGTAAATAGTCATGTTATTGCTCCGTAGCAAAATGACAAATAAGCataactaggtagctagctatattC

Function

NR:

description
ATP synthase O subunit, mitochondrial precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2052304 True 941 lncRNA 0.47 6 25897760 25904054

Neighbor

gene id symbol gene type direction distance location
LOC110501629 ppa6 coding upstream 188867 25702896 ~ 25708893 (+)
LOC110501626 LOC106582114 coding upstream 202029 25676037 ~ 25695731 (+)
LOC110501624 LOC106582115 coding upstream 246497 25619178 ~ 25651263 (+)
LOC110502118 LOC106582051 coding upstream 310073 25564668 ~ 25587687 (+)
LOC118943581 NA coding upstream 490019 25401479 ~ 25407741 (+)
LOC110501634 LOC106582107 coding downstream 3789 25907843 ~ 25914106 (+)
LOC110501637 LOC106582050 coding downstream 19378 25923432 ~ 25926978 (+)
LOC100301670 LOC100301670 coding downstream 29924 25933978 ~ 25940120 (+)
LOC110502075 NA coding downstream 127433 26031487 ~ 26035739 (+)
LOC110501640 LOC106582103 coding downstream 149976 26054030 ~ 26062493 (+)
G1793121 LOC106582109 non-coding upstream 51797 25843303 ~ 25845963 (+)
G1793065 NA non-coding upstream 88496 25808430 ~ 25809264 (+)
G1793063 NA non-coding upstream 91108 25806477 ~ 25806652 (+)
G1793053 NA non-coding upstream 129998 25744287 ~ 25767762 (+)
G1793052 NA non-coding upstream 153512 25743896 ~ 25744248 (+)
G1793174 NA non-coding downstream 36189 25940243 ~ 25953741 (+)
G1793183 NA non-coding downstream 49957 25954011 ~ 25954252 (+)
G1793201 NA non-coding downstream 77535 25981589 ~ 26000950 (+)
G1793214 NA non-coding downstream 94044 25998098 ~ 25998595 (+)
G1793265 NA non-coding downstream 166271 26070325 ~ 26070573 (+)
G1793045 NA other upstream 166006 25731326 ~ 25731754 (+)
G1792649 NA other upstream 601203 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 884105 24848514 ~ 25013655 (+)
G1792040 NA other upstream 1054475 24842942 ~ 24843285 (+)
LOC110501605 LOC106582130 other upstream 1487047 24394068 ~ 24423067 (+)
G1793717 NA other downstream 411772 26315826 ~ 26316243 (+)
G1795411 NA other downstream 1999528 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2132874 28036917 ~ 28052019 (+)
G1795550 NA other downstream 2187511 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 3073836 28977890 ~ 28984226 (+)

Expression


Co-expression Network