G1793842 (klhl6)


Basic Information

Item Value
gene id G1793842
gene name klhl6
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26303384 ~ 26304276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2053048
AAGGTGACACAAGCAAACTCCACCCACTTCCGGTTGTGggactcctcctccatctctgtgaTTGGCAGCTTGGCGACTTCCAGCCGGCTGCGGCGCAGAGGGTCAAGGCAGGTCACAGTGGCAACGAAGCGCTCCTCTTTGGTGCAGCCACCGATGATCATGAACACCTCAGATAGGTAGTGCTGTAAACGAGGCTTGGTACGCTCTGtgaccacctcgttgCCTGACAGGTGGTAGGTGCGGGCCTCCTGCAGTAGGGTGAAGGCCTCGTCACAGCGGCGAATCAGCTGGTCGGCCTCCACCGTTTCCAGGAAGTAAGCCGGCTCCAGCAGTGGCAGACGCACGTATGACAGAAGACCAGCTAGTAGGAggcatctctcctcctcctttgctCGCACCCAGCGCATCAGAGCCTCAAACACACTCTCCTCCCTTGTCACTCCCAGGTCATCTCTCTTCATAGCGTTCTGCAACGCCCCCGCTGGCAGCTCCAGGTACTCCTCATGCTGAACCACTCTGGAGAACTCTGAAACCAGGTAGTCCTGGACCCTGTCTCTCAGTGCAGGCAATGAGTGGGCCTCAGCCAGACGCAGTACACCTACACAGCTCTCTGGCTGGAGAGAGTCAGCCAGGAACCCTGCACAGGCCTCCACTACAC

Function

symbol description
klhl6 Predicted to act upstream of or within B cell receptor signaling pathway and germinal center formation. Orthologous to human KLHL6 (kelch like family member 6).

NR:

description
kelch-like protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2053048 True 658 lncRNA 0.59 3 26303384 26304276

Neighbor

gene id symbol gene type direction distance location
LOC110502076 LOC106582039 coding downstream 3476 26294460 ~ 26299908 (-)
LOC110501642 LOC106582101 coding downstream 78587 26123770 ~ 26224797 (-)
LOC110501639 LOC106582104 coding downstream 289409 26010941 ~ 26013975 (-)
LOC110501638 LOC106582105 coding downstream 302160 25945133 ~ 26001224 (-)
LOC110501636 LOC100194724 coding downstream 398990 25897760 ~ 25904394 (-)
LOC110501645 LOC106582048 coding upstream 12959 26317235 ~ 26321085 (-)
LOC110501646 LOC106582100 coding upstream 84141 26388417 ~ 26447220 (-)
LOC110501648 LOC106582099 coding upstream 195327 26499603 ~ 26516319 (-)
LOC110501651 LOC106582096 coding upstream 229958 26534234 ~ 26567495 (-)
glra2 glra2 coding upstream 282362 26586638 ~ 26597980 (-)
G1793721 NA non-coding downstream 173187 26129939 ~ 26130197 (-)
G1793720 NA non-coding downstream 173614 26129531 ~ 26129770 (-)
G1793594 NA non-coding downstream 181726 26121378 ~ 26121658 (-)
G1793593 NA non-coding downstream 182582 26120585 ~ 26120802 (-)
G1793874 NA non-coding upstream 32156 26336432 ~ 26336659 (-)
G1793875 NA non-coding upstream 33414 26337690 ~ 26337921 (-)
G1793934 NA non-coding upstream 69069 26373345 ~ 26373547 (-)
G1793945 NA non-coding upstream 77002 26381278 ~ 26381533 (-)
G1794009 NA non-coding upstream 94315 26398591 ~ 26402840 (-)
LOC110501627 LOC106582113 other downstream 591765 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1317116 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1445499 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1453632 24848591 ~ 24849752 (-)
G1791405 NA other downstream 1976257 24326729 ~ 24327127 (-)
G1794978 NA other upstream 964386 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1437096 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1676388 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1705379 28009421 ~ 28019116 (-)
G1796204 NA other upstream 2029948 28334224 ~ 28334621 (-)

Expression


Co-expression Network