G1794101 (LOC106582098)


Basic Information

Item Value
gene id G1794101
gene name LOC106582098
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26483269 ~ 26491521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2053321
GCAAATATGGGTCCTTTATGTTGGCCCAAGGTGCTCGCCAGATTACCATCTTTTGTCCATATCCTTGCAAATCCATCATAGGATCCGGTTGCTAAGAGTGTCCCATCGCTATTCCAGTCTAGTGAGGTGACGTCTTTGTTGCTGGGGACGTCCTGGCCCCCCTCCCTGATGCAGTGTCTGAGCACCAGCTGGGTGGAGCTGCTGTTACTGTTCTCAATAAGGTTCCAGATCCGGGCTGTCGAGTCTCCCGACCCAGAGGCCAGCAGGTCGCTGACAGGGTTCCAGGCACAGATGAACACTTCTGACTCATGACCTCGGAGGACCGTGGCCTTGCTAGCTGGGATCTCCACGTCCACATCCATCTCCATGGGCTCGCTCTGGTTATAGATGGTGTGTGTTCCGTTTTCCTCCCCGTTCACGGTGGCCTCTCCGTTCTTTGTTGCATTAAGTTGGTTGCTAGCGGCAACAACTGCCATGCTGCCGGCCGCCTGTTGCTGGGCTAGCTTGTCGCGGAAGGCCTGCTGCCGCGTCTGTACCACGTCCGGCATCACCGCGTCGATGAGTGACAGAGACTCGATGGGCCGCCCATCAAACACTGTGC

Function

NR:

description
F-box-like/WD repeat-containing protein TBL1X

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2053321 True 601 lncRNA 0.57 5 26483269 26491521

Neighbor

gene id symbol gene type direction distance location
LOC110501646 LOC106582100 coding downstream 36049 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 162184 26317235 ~ 26321085 (-)
LOC110502076 LOC106582039 coding downstream 183361 26294460 ~ 26299908 (-)
LOC110501642 LOC106582101 coding downstream 258472 26123770 ~ 26224797 (-)
LOC110501639 LOC106582104 coding downstream 469294 26010941 ~ 26013975 (-)
LOC110501648 LOC106582099 coding upstream 8082 26499603 ~ 26516319 (-)
LOC110501651 LOC106582096 coding upstream 42713 26534234 ~ 26567495 (-)
glra2 glra2 coding upstream 95117 26586638 ~ 26597980 (-)
LOC110501655 LOC106582091 coding upstream 223176 26714697 ~ 26752657 (-)
LOC110502078 LOC106582090 coding upstream 313897 26805418 ~ 26913306 (-)
G1794009 NA non-coding downstream 80429 26398591 ~ 26402840 (-)
G1793945 NA non-coding downstream 101736 26381278 ~ 26381533 (-)
G1793934 NA non-coding downstream 109722 26373345 ~ 26373547 (-)
G1793875 NA non-coding downstream 145348 26337690 ~ 26337921 (-)
G1793874 NA non-coding downstream 146610 26336432 ~ 26336659 (-)
G1794100 NA non-coding upstream 4457 26495978 ~ 26498010 (-)
G1794528 LOC106583515 non-coding upstream 27601 26519122 ~ 26581313 (-)
G1794527 LOC106582097 non-coding upstream 32549 26524070 ~ 26524927 (-)
G1794633 NA non-coding upstream 219878 26711399 ~ 26712490 (-)
LOC110501627 LOC106582113 other downstream 771650 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1497001 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1625384 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1633517 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2156142 24326729 ~ 24327127 (-)
G1794978 NA other upstream 777141 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1249851 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1489143 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1518134 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1842703 28334224 ~ 28334621 (-)

Expression


Co-expression Network