G1794528 (LOC106583515)


Basic Information

Item Value
gene id G1794528
gene name LOC106583515
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26519122 ~ 26581313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2053789
ATTTTCATATCCAGAacaataccagtgtctacatgtgAAAACAGCACATTTTGTAGAAAAAAAAGTGAAAAAGTTCTACCCGATGACATTttaaaaacagtgattttcaaacactaCGAGATTCGGAGTGACGTGTGGAAAAAGAAGATACCCTCCCTCTGGACTCATTGCAGATTTTGAAAAGCCGTTTTCCTACTTTCttatctttttaaccacagatcatagaaacgtgccattttcacatatgtagactctggtatggtgctggagatgagTTTGAAAAGTGGCAGAATTGCCCTATAATAACCttcaaactacactgaacaaaaatattaaaacgcaacatgtgttagtcccatgtttcatgagctgaaataaaatatcctagaaactttccatatgcacaaaaagcttccttttctcaaattgtgtgcacaaatttgtttccatCCCTCTTAATGAGCATTTAATTTTTGACAAGATAAtccagatgtggcataaacagcatgatcattacacaagtgctcTTTGTGCTGGggtcaataaaaggccactctaaaatgtgcagttttgtcacacaacacaatgccacagttgtCTGAAGTAttgagagtgcaattggcatgctgactgcaggaatgtccaccaaagctgttgccagagaatcgaattagccgcctccaatgttgtagagaatttggcagtgtgtccaaccggcctcaaccgCAGACCAGGTGTAACCGCACCAGCCccggacctccacatccggcttcttcacctatgggatcatctgagaccagccacctggactgCTGATGAAAGTGtcggtttgcacaaccaaataatttctgcacaaattgtcagaaagtctcagggaagctcatctgcgtgctgactgcagtttggcattgtaaacaacttcagtgggcaaatgctcatcttggatggccactggcatactgaagaagtgtgctcttcacggatgaaccCCTGTCACAACTGTAATTGGCAGATGGCAgggcatcgtgtgggcgagcggtttgttgatgtcaacattgtgaacagagtaccccatagtggcggtggggttatggtatgggcaggttataagctacagacaatgaacacaattgcattttatcgatggcaatttgaatgcacagagataccatgacgagatcctgaggcccattgtcgtgccattcatccgccgccatcacctcatgtttcagcattataatgcacagccccatgtcgcaaggacctGTAcagaattcctggaagctgaaaatgtcccagttcttccatggactgcatactcaccagacatgtcaccccttgaacatgtttggaatgctctggatagatgtgtatgacagcgtgttccagttcgagctaatatccagcaacttcgcacagccattgaataggagtgggacaacattccacaggccacaatcatcagcctgatcaactctatgcgaaagaGATGTTCCgtgctgcatgagacaaatggtggtcacatcacATACTGACTGGTTTTGTGATTCATGCccctattttttttaaaggtatctgaccaacagatgcatatctgtattcccagtcatgtgaaatccataaattagggcctaattgatttatttcaattgacttatttcctgatatgaactgtaactccgaaaaatgttttttttaattgcatgttgcgtttatatttttgttcagtgtatatattttttatcttaatttaactatgcaagtcagttaagaacaacttcttatttacaatgacggcctgccaagagcaacaacacggtagcaacacaacatggcagcagcacaacatggtagctgCACAAATATGGCATAAACATtgttaggcacagacaacagcacgaaGGGCAAAAagtgtagagacaacaatacatcacgtgaagcagccacaagtgtcagtaagagtgtccatgattaagTCGTTGAAATGgcgataaaactgtccagtttgagtgtttcttgcagcttgttccagtcgctagctgcagtgagCTGAAAaaggagcaacccagggatgcgtgtgctttggggacctttacaGAATGTGACTGCCAGAACCGGGGTTGTATGTGGAAGATGAGGGTTGAATGCGGGTATCTCAGATGTGGGGAGTGAGGCTTAagtttttataaataagcatcaaccagtgtgtcttgcgacgggtatacagagatgaccagtttacagaggagtatagagtccactgatgtgtcctataaggagcattggtggcaaatctgatggccgaatggtaaagaacatctagccactcgacagcaaccttacctgccgatctataaattacgtctccgtaatctaacatgggtaggatggtcatctgaatcagggttagtttcacagctgtggtgaaagaggagcaattacgatagaggaaaccaagtctagatttaaccgtGGCTTGCAGCTTGGATATGTGCTGAGAGGACAGTGTACTGTcaagccatactcccaagtacttgtatgaggtgactactgGGGAGGTGCCAGCTGAGTATAAgcctgtatcatctgcatataaatggttgagagagcttcctactgcctgagctatgttgttgatattCTGTTTTCGCTCAGTGCTTTATAAAAACGAAAATGTAGACTATTCAACAGTTAAATAAATTGTTACACTCCAATTCAGTAGCTATTGAAACATGTGACTTTACACTCACTCAGTGTACAGTTGGGGTATTGTTGTCTACAGATTTGTGC

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2053789 True 2790 lncRNA 0.43 2 26519122 26581313

Neighbor

gene id symbol gene type direction distance location
LOC110501648 LOC106582099 coding downstream 2803 26499603 ~ 26516319 (-)
LOC110501646 LOC106582100 coding downstream 71902 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 198037 26317235 ~ 26321085 (-)
LOC110502076 LOC106582039 coding downstream 219214 26294460 ~ 26299908 (-)
LOC110501642 LOC106582101 coding downstream 294325 26123770 ~ 26224797 (-)
glra2 glra2 coding upstream 5325 26586638 ~ 26597980 (-)
LOC110501655 LOC106582091 coding upstream 133384 26714697 ~ 26752657 (-)
LOC110502078 LOC106582090 coding upstream 224105 26805418 ~ 26913306 (-)
LOC110501658 cenpj coding upstream 341527 26922840 ~ 26933846 (-)
LOC118943583 cenpj coding upstream 352207 26933520 ~ 26944274 (-)
G1794100 NA non-coding downstream 21112 26495978 ~ 26498010 (-)
G1794101 LOC106582098 non-coding downstream 27601 26483269 ~ 26491521 (-)
G1794009 NA non-coding downstream 116282 26398591 ~ 26402840 (-)
G1793945 NA non-coding downstream 137589 26381278 ~ 26381533 (-)
G1793934 NA non-coding downstream 145575 26373345 ~ 26373547 (-)
G1794633 NA non-coding upstream 130086 26711399 ~ 26712490 (-)
G1794663 NA non-coding upstream 179219 26760532 ~ 26760738 (-)
G1794685 NA non-coding upstream 214435 26795748 ~ 26796885 (-)
G1794736 NA non-coding upstream 277602 26858915 ~ 26859289 (-)
LOC110501627 LOC106582113 other downstream 807503 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1532854 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1661237 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1669370 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2191995 24326729 ~ 24327127 (-)
G1794978 NA other upstream 687349 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1160059 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1399351 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1428342 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1752911 28334224 ~ 28334621 (-)

Expression


Co-expression Network