G1794633


Basic Information

Item Value
gene id G1794633
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26711399 ~ 26712490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2053901
acctgttttcgctttgtcattatggggtattgtgtgttttataataaggctgtaacaaaatgtggaaaaagtcaagtggccTGAGtacttccgaaggcactgtatgtacgcATCATCTTCTGACATTCTTTTCAGTTATGACAATGTTTATGGGGGGAAGAAAGAAAAAATATTTGAGTTAGGCCGGTTCGATTTGACATTTAAAGTTACAGTAAAGCCTAGCATTGTTATCGAAACAATGATGTTGACATGACAGGCTTAAGTATTATTTCCATTCCTTAGTTAATTACTATTTCCCTGTCAACCCATTCACTGTAGGCTACAATACACTTATCTGACATACACCCTAGATCATAGAACTATCGTAGTGACATGACACACACTTGCCTCATCAACATCCTATCTTAATGAACCTGAGCACCTTTTTGGCAGCATCCCATCCCCAAGAAAGAAGACACATTGTCATCATCTGAAAGCTTGAATAGGTCTTTATTGCTCTTATTATTCATCTTAACATGAAGGAGTCAACATGTACCACTTGGCCACAGTTCCCTGAATTAGCATGTAAGTCTGCTACAGGCCAGAGTGTCATAGAGAGTCACATGCTCTGGGGTTCCAGTACCTAAAGCTCATTGTTGCAACATGTGTTTCCTCCcattcacatacagtacagtcaCCAAGGCaaaacatcaacatcacatcagGCCACAGTTCTTGTTCTCCATTCCCCAGATTCCATTTTGGCTTGAAATGACCCATGTTGACCTGTGAAGAAAGCAGCATCATAATTCAGAAACATAAGTTAACTCTCAATTATTTTGCCAATTGCTTTGGTCCCAGACAGAATACCTGAATCGCAACCTTATTTTTGtggatcttttttttttaaacaatcatTTTTAAGACATTTATTATATTTAACAGTTTTATTGTAGCACAAACGGTTGGATTTAAAGCACAGCAGTGATGAATATGAAAATAAATTATACTTGACATTGGAAAGTTTG
>TU2053900
acccttgaatgagtaggtgtgtccaaccttttgactagtactgtaaggtatttcattttttatacattttctaaattttctaaaaacctgttttcgctttgtcattatggggtattgtgtgttttataataaggctgtaacaaaatgtggaaaaagtcaagtggccTGAGtacttccgaaggcactgtatgtacgcATCATCTTCTGACATTCTTTTCAGTTATGACAATGTTTATGGGGGGAAGAAAGAAAAAATATTTGAGTTAGGCCGGTTCGATTTGACATTTAAAGTTACAGTAAAGCCTAGCATTGTTATCGAAACAATGATGTTGACATGACAGGCTTAAGTATTATTTCCATTCCTTAGTTAATTACTATTTCCCTGTCAACCCATTCACTGTAGGCTACAATACACTTATCTGACATACACCCTAGATCATAGAACTATCGTAGTGACATGACACACACTTGCCTCATCAACATCCTATCTTAATGAACCTGAGCACCTTTTTGGCAGCATCCCATCCCCAAGAAAGAAGACACATTGTCATCATCTGAAAGCTTGAATAGGTCTTTATTGCTCTTATTATTCATCTTAACATGAAGGAGTCAACATGTACCACTTGGCCACAGTTCCCTGAATTAGCATGTAAGTCTGCTACAGGCCAGAGTGTCATAGAGAGTCACATGCTCTGGGGTTCCAGTACCTAAAGCTCATTGTTGCAACATGTGTTTCCTCCcattcacatacagtacagtcaCCAAGGCaaaacatcaacatcacatcagGCCACAGTTCTTGTTCTCCATTCCCCAGATTCCATTTTGGCTTGAAATGACCCATGTTGACCTGTGAAGAAAGCAGCATCATAATTCAGAAACATAAGTTAACTCTCAATTATTTTGCCAATTGCTTTGGTCCCAGACAGAATACCTGAATCGCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2053901 False 1007 lncRNA 0.38 1 26711399 26712405
TU2053900 True 947 lncRNA 0.39 1 26711544 26712490

Neighbor

gene id symbol gene type direction distance location
glra2 glra2 coding downstream 113419 26586638 ~ 26597980 (-)
LOC110501651 LOC106582096 coding downstream 143904 26534234 ~ 26567495 (-)
LOC110501648 LOC106582099 coding downstream 195080 26499603 ~ 26516319 (-)
LOC110501646 LOC106582100 coding downstream 264179 26388417 ~ 26447220 (-)
LOC110501645 LOC106582048 coding downstream 390314 26317235 ~ 26321085 (-)
LOC110501655 LOC106582091 coding upstream 2207 26714697 ~ 26752657 (-)
LOC110502078 LOC106582090 coding upstream 92928 26805418 ~ 26913306 (-)
LOC110501658 cenpj coding upstream 210350 26922840 ~ 26933846 (-)
LOC118943583 cenpj coding upstream 221030 26933520 ~ 26944274 (-)
LOC110501659 NA coding upstream 227270 26939760 ~ 26943228 (-)
G1794528 LOC106583515 non-coding downstream 130086 26519122 ~ 26581313 (-)
G1794527 LOC106582097 non-coding downstream 186472 26524070 ~ 26524927 (-)
G1794100 NA non-coding downstream 213389 26495978 ~ 26498010 (-)
G1794101 LOC106582098 non-coding downstream 219878 26483269 ~ 26491521 (-)
G1794663 NA non-coding upstream 48042 26760532 ~ 26760738 (-)
G1794685 NA non-coding upstream 83258 26795748 ~ 26796885 (-)
G1794736 NA non-coding upstream 146425 26858915 ~ 26859289 (-)
G1794762 NA non-coding upstream 178241 26890731 ~ 26890949 (-)
G1794748 LOC107572531 non-coding upstream 183918 26896408 ~ 26964871 (-)
LOC110501627 LOC106582113 other downstream 999780 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1725131 24985959 ~ 24986268 (-)
G1792345 NA other downstream 1853514 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 1861647 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2384272 24326729 ~ 24327127 (-)
G1794978 NA other upstream 556172 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 1028882 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1268174 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1297165 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1621734 28334224 ~ 28334621 (-)

Expression


Co-expression Network