G1794748 (LOC107572531)


Basic Information

Item Value
gene id G1794748
gene name LOC107572531
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26896408 ~ 26964871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2054023
TTACTGTACTTACCGAGTGCTGGAGGGCAAAAATCTCTGTCCATTTTACTACATCAAGAGTATTCTTCCTGAATTCAAGACCTCTCTTCCTGAATTCAAGACCTCCCCTCCTGAAATCAAAACCTACCTCATTAGGATACCACAGAGCTACACATAACAATACATGTCTCCAATAGAGgtcatacacagacagacaaagtgaCGGACGAACGGACGCTGACACATACCTTTCACTGTCTCCGACAAGTTTTTGTACGTTTTTTTTCATATCCAGAGGTTTTTGTGCTTGTGGTAGTACATTATGTTGTTGTAGTGTACTGAGAGAGCTATTAAACTGAGAGGATCCAACTAAGGGCACTAAAGATGGGGTCATATAGGCGCCATGAGTGGTAGGTGAAAGGGAGCTGAGGTGTCCGCCAGTAAGTGGTGCCTCAAAACTTAACCCCATTGATCTGGCTGAGCCTCCAAGAGGTGGTCCGCCTGCTGAAGAAGCCTCATATAAATCTGGAATGTAACATGCACTGGCTGTGGCCCCAAACAAAGAGCCGTGAGGTTGTCTGCTTTGAGAACCTGCCCTTCCGCCACCGAAACCAAACCCTGATGGGGGCGCAGAAGCAGGGACAACAGAAGGTTGCCAGTGGTCCATTTCCACTAGTCCACAATCCTTATCCTCAGATAAGCTATTATCCAAGGTCCACATTTTGCTAGTCTCACACATTGACGACTGTTCCACAGGATAGGCCTCTTGGGGTTTGGAAAGTAGCAGGTCCCCACCGGCTTGCAGTTCCGGGAAGGTTGCAGTATGGGAGATAGCCCCAACTCCAGGTCTGGCATGAACTCCCATCTCGTATCTAATCGCTCGAAACTCATTGGAGAcaagagcagagggaggaggaagagaaccTGAACCTCCGGCAAAGAAAGACTGCAGTCGAAATGGAGGAGGACCAGGAGAACTGAGGACAGgagcagggggtggaggaggaagagcatCTGAAACTGTGGCAGGGAAAGACTGCAGTCGAGATGGAGGAGGACCAGGAGAACTGAGGGCAGAagcagggggtggaggaggaaaaGCATCAGCAACAACGCAAGACTTGATCTGAagatgatgaacagagggaggaggacgAGGCACatcagcaacagagagagacttCTTCTGTGTCTCTACAGGGTCAAATGCCGAACCGGCACAAACCTTCCTGTGTCTGTCCGCCCGTCTAaagtctccctctctactcttcgCAAGCCTCACTATCTTTGGGAGAGAGTAGAAGGTCCCACACAGCTCAGGGATGAAATCCGTCTCCATAGCCATAGGCAGCATAGTGGTAGTAAGGTACGGGGTGCGTGGTATGCATTGGCTGCCTGAAAGCGTGTGGAGAgttggagaggaagaagaggacagagCCTCACTATGCATGAATTCCCGTAATTCAAAGTCCTGTAAAACAAAGACAAGAACAGTTCAGTGATTAAACTATGAATTGACAGGAATCATTTTTCTTTATAGTTAACAGCAAGAAAGAAGCAGATCACTACCAGGTCATCAAAGTACTCCATCTCTTCATCCGTCACAGCTCCTTCACTCTTCAAAGTCATATCTAAAGGTTCGGTAGCAGCGGACAAGGTCACTGGGCTGGCTGAGACCATATGGCCCATGAAGTAAGAGGAATTAAGTATCCTACCAAGAGGCACCTCATCCGTAGCCCTCTGATTGAGACATTTGGAACGTAAGTTCACAGATCCTTCCCATGATTCGTCATCCACCTGGAGTTGACCCATCAATTCATgctcctcccccatccccctctcctttagACATATTTTTCTGCATAAAACATGCCCTAGCCCACCATTCAGCAAGTTTGACATTGAGTCTGATCCAGAGTCCATCCCATCTCCCTCATATTCCTCCTGCTGCCAGCTAAGGTAAGGTAAGAAGTCGACGTCCTCGTCTGAGATCAGTTTGGGAACATCTGTGAAGCCCGCGTCAGGCTGCTCTGAGTCCTGGGAGAGAAAGAACGCATCAGAACATTGTATTTTTCTACATTTGTATTGAAGTATTGTCgatgtgtgtgcgcacacactAGCGTTTGGCAGACGTACCCTCTCCTCGATGGCAACAAAGCTGGTGAACTGAGACAGGATGGAGAACTCTTTGCTCAGCTCAATGATGAAGGACTTCATCACTGATTTCTTCCCCTGAGAGAATTGAtactatatatataaaacaaaaacTTTCCGTACACACAGAATAGGTACAGTGTACACACTCCATACTAGGGTTGTCATGATACCAGTACCGCAATActaggaaagaaggaaggaaggaaggaaggaaaacaAAACATGAAGCAGCCTTAATTTCCAGAGGAAAACACTCCTAATGTTGGTCAAAAACAGCCTTATGTTGTCACCCAGAGTCACATTtcttttccaagctatagcacacaatattttacacaaAGTAGGTGTTTAAAGGACCATTAGCCTGCTTTGTGTTTTCTTTTTTGGTAAGAAAAATCTGGTGTTGTAGTATAGCTATACTGGTTGTGACAACACTACTCCATTCACAATCTAATGTTCACACACACCTCATGTTCAGCCTCGTTGGTGTGAAGACTGCCATCCTCATAGTCTCTGATAACGGCCCTCGCTGTGAGCTTATGAAGGAACTgaaacacacacacacacacacacacacacacacacac
>TU2054020
TTACTGTACTTACCGAGTGCTGGAGGGCAAAAATCTCTGTCCATTTTACTACATCAAGAGTATTCTTCCTGAATTCAAGACCTCTCTTCCTGAATTCAAGACCTCCCCTCCTGAAATCAAAACCTACCTCATTAGGATACCACAGAGCTACACATAACAATACATGTCTCCAATAGAGgtcatacacagacagacaaagtgaCGGACGAACGGACGCTGACACATACCTTTCACTGTCTCCGACAAGTTTTTGTACGTTTTTTTTCATATCCAGAGGTTTTTGTGCTTGTGGTAGTACATTATGTTGTTGTAGTGTACTGAGAGAGCTATTAAACTGAGAGGATCCAACTAAGGGCACTAAAGATGGGGTCATATAGGCGCCATGAGTGGTAGGTGAAAGGGAGCTGAGGTGTCCGCCAGTAAGTGGTGCCTCAAAACTTAACCCCATTGATCTGGCTGAGCCTCCAAGAGGTGGTCCGCCTGCTGAAGAAGCCTCATATAAATCTGGAATGTAACATGCACTGGCTGTGGCCCCAAACAAAGAGCCGTGAGGTTGTCTGCTTTGAGAACCTGCCCTTCCGCCACCGAAACCAAACCCTGATGGGGGCGCAGAAGCAGGGACAACAGAAGGTTGCCAGTGGTCCATTTCCACTAGTCCACAATCCTTATCCTCAGATAAGCTATTATCCAAGGTCCACATTTTGCTAGTCTCACACATTGACGACTGTTCCACAGGATAGGCCTCTTGGGGTTTGGAAAGTAGCAGGTCCCCACCGGCTTGCAGTTCCGGGAAGGTTGCAGTATGGGAGATAGCCCCAACTCCAGGTCTGGCATGAACTCCCATCTCGTATCTAATCGCTCGAAACTCATTGGAGAcaagagcagagggaggaggaagagaaccTGAACCTCCGGCAAAGAAAGACTGCAGTCGAAATGGAGGTGGACCAGGAGAACTGAGGACAGGagcagggggtggaggaggaagagcatCTGAAACTGTGGCAGGGAAAGACCGCAGTCGAAATGGAGGAGGACCAGGAGAACTGAGGACAGAagcagggggtggaggaggaggaagagaatctGAAACTGCGGCAGAGAAAGACTGAGATCGAAatggaggaggacaaggagaatagaggacaggagcagggggtggaggaggaagagcatCTGAAACTGTGGCAGGGAAAGACTGCAGTCGAGATGGAGGAGGACCAGGAGAACTGAGGGCAGAagcagggggtggaggaggaaaaGCATCAGCAACAACGCAAGACTTGATCTGAagatgatgaacagagggaggaggacgAGGCACatcagcaacagagagagacttCTTCTGTGTCTCTACAGGGTCAAATGCCGAACCGGCACAAACCTTCCTGTGTCTGTCCGCCCGTCTAaagtctccctctctactcttcgCAAGCCTCACTATCTTTGGGAGAGAGTAGAAGGTCCCACACAGCTCAGGGATGAAATCCGTCTCCATAGCCATAGGCAGCATAGTGGTAGTAAGGTACGGGGTGCGTGGTATGCATTGGCTGCCTGAAAGCGTGTGGAGAgttggagaggaagaagaggacagagCCTCACTATGCATGAATTCCCGTAATTCAAAGTCCTGTAAAACAAAGACAAGAACAGTTCAGTGATTAAACTATGAATTGACAGGAATCATTTTTCTTTATAGTTAACAGCAAGAAAGAAGCAGATCACTACCAGGTCATCAAAGTACTCCATCTCTTCATCCGTCACAGCTCCTTCACTCTTCAAAGTCATATCTAAAGGTTCGGTAGCAGCGGACAAGGTCACTGGGCTGGCTGAGACCATATGGCCCATGAAGTAAGAGGAATTAAGTATCCTACCAAGAGGCACCTCATCCGTAGCCCTCTGATTGAGACATTTGGAACGTAAGTTCACAGATCCTTCCCATGATTCGTCATCCACCTGGAGTTGACCCATCAATTCATgctcctcccccatccccctctcctttagACATATTTTTCTGCATAAAACATGCCCTAGCCCACCATTCAGCAAGTTTGACATTGAGTCTGATCCAGAGTCCATCCCATCTCCCTCATATTCCTCCTGCTGCCAGCTAAGGTAAGGTAAGAAGTCGACGTCCTCGTCTGAGATCAGTTTGGGAACATCTGTGAAGCCCGCGTCAGGCTGCTCTGAGTCCTGGGAGAGAAAGAACGCATCAGAACATTGTATTTTTCTACATTTGTATTGAAGTATTGTCgatgtgtgtgcgcacacactAGCGTTTGGCAGACGTACCCTCTCCTCGATGGCAACAAAGCTGGTGAACTGAGACAGGATGGAGAACTCTTTGCTCAGCTCAATGATGAAGGACTTCATCACTGATTTCTTCCCCTCATGTTCAGCCTCGTTGGTGTGAAGACTGCCATCCTCATAGTCTCTGATAACGGCCCTCGCTGTGAGCTTATGAAGGAACGTGCCCCTGGTTTTCTGTAGCTCAGTGGTGGACACCATTGTCTCAATGTTCTGACCACTCAGGTCTCCAAGAAGAGTGGCCTGTGTACAGTGTGGCACGAAGCCGTAGACCAGGGTGTGGCAGTCAGTGAAGAGTGCGTGGAGCTGAGAGGGCGCCTGAACAGGGGGGGGAGCTGAGGGGTTAAACTGCTGCCACTTCACAGACACAGAGCTGCAGCCTGGAGACACGATGCGCTTCACCTGGCACGccacCTTCTCTCGCCAGGTGTGCTTTGTCTTTGTGTCAAAGAACTCATAGGCCCCTCCCCCTGCCTGGGCCAGGGCCCGCAACATGTGCCGATTAGCTGTTGGGCTGAGGCCGCAGGTGAAGAGGCGGCTGTGCTGGGCATGCTGTCTGACCAGCTGCAGGGTCAGGGCTTGGTTCTGGACGTGACCGTCTGATAGCAGCAGCAGGTTCCTCATGCCATGCGACGGAGGCAACAGACTCAGGCTGCGCAGGGGCCTCCacagctcagtgctgcccccaaCAGGTGAGGA

Function

NR:

description
poly [ADP-ribose] polymerase 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2054023 False 2723 lncRNA 0.47 4 26896408 26964871
TU2054020 True 3012 lncRNA 0.51 5 26960988 26964871

Neighbor

gene id symbol gene type direction distance location
LOC110501655 LOC106582091 coding downstream 143751 26714697 ~ 26752657 (-)
glra2 glra2 coding downstream 298428 26586638 ~ 26597980 (-)
LOC110501651 LOC106582096 coding downstream 328913 26534234 ~ 26567495 (-)
LOC110501648 LOC106582099 coding downstream 380089 26499603 ~ 26516319 (-)
LOC110501646 LOC106582100 coding downstream 449188 26388417 ~ 26447220 (-)
LOC110501663 LOC106582084 coding upstream 184458 27149329 ~ 27186838 (-)
LOC110501665 NA coding upstream 375962 27340833 ~ 27364593 (-)
LOC110502080 wars2 coding upstream 406196 27371067 ~ 27437479 (-)
LOC110501670 LOC106582076 coding upstream 527603 27492474 ~ 27498625 (-)
LOC110501672 NA coding upstream 536820 27501691 ~ 27517629 (-)
G1794762 NA non-coding downstream 5459 26890731 ~ 26890949 (-)
G1794736 NA non-coding downstream 37119 26858915 ~ 26859289 (-)
G1794685 NA non-coding downstream 99523 26795748 ~ 26796885 (-)
G1794663 NA non-coding downstream 135670 26760532 ~ 26760738 (-)
G1794633 NA non-coding downstream 183918 26711399 ~ 26712490 (-)
G1794904 NA non-coding upstream 146990 27111861 ~ 27114211 (-)
G1794884 NA non-coding upstream 180917 27145788 ~ 27146680 (-)
G1794885 NA non-coding upstream 182839 27147710 ~ 27148363 (-)
G1794937 NA non-coding upstream 222543 27187414 ~ 27187624 (-)
G1794938 NA non-coding upstream 223162 27188033 ~ 27188306 (-)
LOC110501627 LOC106582113 other downstream 1184789 25709599 ~ 25744218 (-)
G1792433 NA other downstream 1910140 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2038523 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2046656 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2569281 24326729 ~ 24327127 (-)
G1794978 NA other upstream 303791 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 776501 27741372 ~ 27770708 (-)
G1795850 NA other upstream 1015793 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 1044784 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1369353 28334224 ~ 28334621 (-)

Expression


Co-expression Network