G1794904


Basic Information

Item Value
gene id G1794904
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27111861 ~ 27114211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2054190
CTGTTCACTTTCCATAACATCTTTATTGTCTCATTTTAAACATATTTACACGTctttttttgttcagtaaaaatacaaatacggaacacttttttcaaaatcaacatcctccCGGCGACTGACGGTGCCAAAGAACGCCTGGGCTTTCTCCCCAGACAGGAAGCAGTGATGATGTTAAGAGGTGTGACAGAGGAAAGAGGAATAGAGTGAGACAAGTGTTGTACAGGTGCTGCCAGGTTTCAAGACATGAGAAATTAGTGACAGAAACCAACCAATTAGCTAAGCAGCAACACAAATATAGTATGGCTTTATCGATTGGCAAGGTGAGTTGTTCTGTAATCAGCCCAACCCCAACATTATCCTCATCACTATTCCTTCATCATCATGGGTCTGCTAGAGCGACAGCTGGGTTTCTAGCAGACTGGTGTATGAGCTTGTGTATGAATAACAttttgtaaaataaaaatacattaaaaaaagtaTTGGCCAAAGGCGTCACACAGAGCAACACTTGATAAGGCTTTAAATTAATTGATACTTCCAACAAAAATGGTATTTCTTCCAGGGTACATTTCTATTTCGCAGTGTTACCGTCAGTCCCCTAAACCTAAAGTATATCCCCATCCACTCCAATGCACCAATCACAGATTCCTCACTAAACACAGCAGAGTTCCTTCCGTTCCATCTACTGTTGCAGAAACAACATTCATATGAAACACAAAAGGTCCATTAAGAACACAGCCCATAGAGAATGAATGGCATATCATTCAACATACTCATCGCACAGGTGACGGAACCCAAGTCCTAATATGCGAGTGGTGATTGGAATGAGAACAAGAAACAGTTTAGGTAGAACCCTATCAGTAGGGTGGGGAGTTGTTCCTGAATAGGCTATACCCACCAGGCTATACCCATCAGTGGTAGTGTTAGAGCAACAATATGGCTCCGTGTCAGTCATTTTAAAAGGAGTCAAAGACACAGAGATAATAAATGAAGGGCTTTGTGTCTTCAGCTCCTACAGTGCTGTAACTTCACTCCATTTTCCCTCTCAGTAATCCAAGCAACAAAGTGCATAACAATTTATCCACAGGGGCCATTTTATCAGCAGACAAGAATCACGGCCAAATCAAGACCTGTCCAATTTGCCTGTGGAGTGTTAGTGATTTATGGAAAGACAGGAACAGAAATTGACCAGGCAAGAGGAGTGACTGGAGAAGTGAAGAAATATGACAAGAAAGAGACGATGGAGGTGGAATGGAGTGATAAGACAaggttgagaggagagagagaagcagcatcGGTTGAATAGCAGCAACAAAATGATTTGAGGCCAGGCTAAGCTACAATATGTCACCTGCTAATgatgagagatggaaagagagaatgatagagaaagaacagaaatGGCAGAATGTAGCATAGAGAACGCAAGGGATATCAATTCCATTTCACAGGCCCACTTTAGAAAGGTGCCAGAGGGGGACGCATTAAGCCGTTGCTCCTATCCACAAAGCAACACTGATACAGTTCCAGGTCAAGAGAGTAAACAGAAAATGGCAGACGGACCAGGAGGGTCACATTGTTGTGTCCCCGCCAATCAGTGTCCAAAAGATAGaatgaaaaaaacaaaaatcaacaAACCCCACTGATCGCATAGTCTTCAGTTTTACTGTCAGTCTGACTGTCTGGAATATACATATCCCTTCAGAGAAGTCTGTCTGTTTGTTCGTTCAGACTCCATACACCCTCTCGCCCCTGTATGCGTCCGTTATGAGACAGTTTGGTGAAAACAAATCAAGCCTCCTGACAAAAAAGTCACATTACGAGGGCAATCACAAAAGCTGAACGCACCCACCGTCCTTCTGATCAGCAGAGAGCTATagaaagtgagagcgagagaatTAAAGAATAAGAAAGGGAGCTATTGTTCCAGTCCCCTCCACTCTACAATGGTCTGAGCTCTCTCCTTCTGCAGTCTGTAGTAGTgagagatggaggcagggaggcaAGGACGCATTGGTCCCCTGGAGGACCCCTGGTCTCTAccgctgggcctggctccctggGAGGGTGAGGTTGGCCAGGTGCAGTACCGGCAGGGGGTGGGCCTCCGTGTTGAACACCCAGCTCTCCAAAGGCATCAGGTCATCACTGGAGAACAACAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2054190 True 2166 lncRNA 0.44 2 27111861 27114211

Neighbor

gene id symbol gene type direction distance location
LOC110501659 NA coding downstream 168633 26939760 ~ 26943228 (-)
LOC118943583 cenpj coding downstream 175177 26933520 ~ 26944274 (-)
LOC110501658 cenpj coding downstream 178015 26922840 ~ 26933846 (-)
LOC110502078 LOC106582090 coding downstream 198555 26805418 ~ 26913306 (-)
LOC110501655 LOC106582091 coding downstream 359204 26714697 ~ 26752657 (-)
LOC110501663 LOC106582084 coding upstream 35118 27149329 ~ 27186838 (-)
LOC110501665 NA coding upstream 226622 27340833 ~ 27364593 (-)
LOC110502080 wars2 coding upstream 256856 27371067 ~ 27437479 (-)
LOC110501670 LOC106582076 coding upstream 378263 27492474 ~ 27498625 (-)
LOC110501672 NA coding upstream 387480 27501691 ~ 27517629 (-)
G1794748 LOC107572531 non-coding downstream 146990 26896408 ~ 26964871 (-)
G1794779 NA non-coding downstream 184564 26926912 ~ 26927297 (-)
G1794762 NA non-coding downstream 220912 26890731 ~ 26890949 (-)
G1794884 NA non-coding upstream 31577 27145788 ~ 27146680 (-)
G1794885 NA non-coding upstream 33499 27147710 ~ 27148363 (-)
G1794937 NA non-coding upstream 73203 27187414 ~ 27187624 (-)
G1794938 NA non-coding upstream 73822 27188033 ~ 27188306 (-)
G1794919 LOC106582083 non-coding upstream 79108 27193319 ~ 27193737 (-)
LOC110501627 LOC106582113 other downstream 1400242 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2125593 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2253976 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2262109 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2784734 24326729 ~ 24327127 (-)
G1794978 NA other upstream 154451 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 627161 27741372 ~ 27770708 (-)
G1795850 NA other upstream 866453 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 895444 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1220013 28334224 ~ 28334621 (-)

Expression


Co-expression Network