G1794920 (LOC106582083)


Basic Information

Item Value
gene id G1794920
gene name LOC106582083
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27201316 ~ 27203100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2054208
AGCCTATGCAGTGTCATTTGTTTTATCTTATGGTAGCTAGCTTGTTGCAAGCCAGACAATTATTCAGAAACAGCACATCTTTTTGGAGCTGCACAAAATAGTTGATTGGCTTGATAAGTGGCAATGCGTCACTTGTTTAAATCTAAACTCCACCTCTTCCTGAGGAGAACTTCTCCAGGTTTTCACACTACTTGAGAAGCCTGGCATAAGAGGCTAGCATACCTGAGCAGGAAGAAGAGACAACGGCACACTAGCTCCACCTCCAGGCCGTCCTGGACATAGCAGTTGAAGAGAGACAGCAGGTCTGGAATGTAGGGGAATGGCAGGACCAGCAAAGACACCTCCAGCTCACTGGACCGGACCTTCTTTATTACGTCCAAGACGTAGCGAGACGGAGAAACGTTTCCAAAGGCCACAAGGATAGGATTGGCCTTAGGTGGAGGCAACTGTTTTCCGGCTGACTGGCAGGCTATCTGATGCTCCTCCATTTTCCTGCTCTCTGATCTATACAGCTCCAGAGCCTCCATGACACGCTCAGcAGCTTTGACTGTCTCTATGGTTTTCTTCGCCGCTGGTGCTGCCTCTGCATCCTTGATCTCTCCTGGAACCACAGGCTCATCCCCTTTGGCCATGCCCTCCTCaaactcagcctctctctccatctccctctcttcctccaggaTGATGGGTTCTCTGGTCCTCTCCCAGAGCCTCAGGGACTTGTCGTGAGACGAGGACACAATGTGGTCCCCGTTAGGACTGATGGCCAGACACCAAACCTCCCGATGGTGACCCTCTAAGGTCTGGATGTGCTCAAACTTGTCTGCGTCCCACTGTTTGATCTTCTTGTCCTTCCCCGCTGTGAAGAACAGATGGGTTTTGGGGACAAACTGAAGGAACATGAcgctgagaaaagagagagaaaaaagcagacgagaaatggagaaaaaaaaacagcgaCATGAAAGAGCAGATGGGGTGATGTCATCGGTCAGAGGCAGCTAACAAGGACAGTGTTTCTGAAACTGGAGATTAAATTAAATATTTTACTGGAAATGGGGAGAATGAAGCCAACATCTATTAAATTATATCATTCAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2054208 True 1100 lncRNA 0.49 6 27201316 27203100

Neighbor

gene id symbol gene type direction distance location
LOC110501663 LOC106582084 coding downstream 14478 27149329 ~ 27186838 (-)
LOC110501659 NA coding downstream 258088 26939760 ~ 26943228 (-)
LOC118943583 cenpj coding downstream 264632 26933520 ~ 26944274 (-)
LOC110501658 cenpj coding downstream 267470 26922840 ~ 26933846 (-)
LOC110502078 LOC106582090 coding downstream 288010 26805418 ~ 26913306 (-)
LOC110501665 NA coding upstream 137733 27340833 ~ 27364593 (-)
LOC110502080 wars2 coding upstream 167967 27371067 ~ 27437479 (-)
LOC110501670 LOC106582076 coding upstream 289374 27492474 ~ 27498625 (-)
LOC110501672 NA coding upstream 298591 27501691 ~ 27517629 (-)
LOC110501675 LOC106582077 coding upstream 336364 27539464 ~ 27544582 (-)
G1794919 LOC106582083 non-coding downstream 7579 27193319 ~ 27193737 (-)
G1794938 NA non-coding downstream 13010 27188033 ~ 27188306 (-)
G1794937 NA non-coding downstream 13692 27187414 ~ 27187624 (-)
G1794885 NA non-coding downstream 52953 27147710 ~ 27148363 (-)
G1794884 NA non-coding downstream 54636 27145788 ~ 27146680 (-)
G1794952 NA non-coding upstream 26172 27229272 ~ 27234648 (-)
G1794953 NA non-coding upstream 27437 27230537 ~ 27231579 (-)
G1794955 NA non-coding upstream 30424 27233524 ~ 27287445 (-)
G1795020 NA non-coding upstream 125754 27328854 ~ 27329502 (-)
G1795090 NA non-coding upstream 178768 27381868 ~ 27382072 (-)
LOC110501627 LOC106582113 other downstream 1489697 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2215048 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2343431 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2351564 24848591 ~ 24849752 (-)
G1791405 NA other downstream 2874189 24326729 ~ 24327127 (-)
G1794978 NA other upstream 65562 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 538272 27741372 ~ 27770708 (-)
G1795850 NA other upstream 777564 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 806555 28009421 ~ 28019116 (-)
G1796204 NA other upstream 1131124 28334224 ~ 28334621 (-)

Expression


Co-expression Network