G1795632 (LOC106582069)


Basic Information

Item Value
gene id G1795632
gene name LOC106582069
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27573559 ~ 27576953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055003
aaatatatattcaAGAGTAACAAAATTGTACTATACATTAAGGAGGATCAAAGACATGAGAAACTCCCGAGAGTAAAAATACAAAAAGGAACATAGATTTGAAAAAATCCCATCATGAGTCATTACATAAGATCTCAAATCAGTCACAGATTGTCAGTCATCACTTTCAAAACTCAGATACAAGGAAACCACACATCATCCACAGCACACCTAATACAAAAACACTCATACACACGAGAAAACTGACTCGGTGAGCAGTTTCTTTTTAAAGCTATTTTTCACTGAGTAGTCCATCCTGGTGGATTGGCAATCCCACTCGCGCTGACAACGATGATCAAATTAAGTGAATTTGATGCCCAATCCTGAAGACATGAGCCATATTATAAAAAAACATGTCCATTTCAATTCATTTTGTCATGCAAGTGAGCAAAAACATTTATGGCACGTTTAAACAATTGTCATTGTTTAAAATATTTCCCTCATATTATGTCACAAATCCGATCTTTGAGATACATATTGGTGCacttagaatgtttgggaattgaCTTACGGCAGAACTTGCAACATCTTGACCCTTCCGTCAGTATGCAATCACATATGGAATACTGTTATTCAGTTGGACATACAAGACTGCGTCAATGGTTGATTGTCAATAAGCATATGGAGATATTGGAGAAAATAAAGCATTCCCTGCTTTGAGCAGTGCTCCACTGCATAACAACAATTCTGTAACACAAGCATAATATTAATGGTCAAATTAACCTGTGGCCATTAGGATGCATTAAAATGTACCAATAATAGTCTGTCATTTACCATACTTGGGCTTGTAATACAAAGGAGGCTATTTATTCATATATTTGACACTTTATAACCAATCCTGCCCAGCTTTCCTTTTGTCTCTGAAACACATCTTTCTTTATcaccgtctgtctctctccctcttccatccctACTCTCCTACACACAGGGCCAGCCCAGTTGCAGAGAGCAGGAACGCTGCTGTCGTTATTCTGCACAAACACTGATCATCAACATCATCTTGTGGTGGATAGACATGCACCAACATTCATTGAAAAAAGCACTTTCAAACTCAAACACACTGGCAATCAAACCCACACGTTTCTTTTTTACACAAAAAGGAAAGAAGTACGTATACATGAAATAATGATAAAAATgcaaataataatattaatcaCAATAATAAGCAGCATTGGGTCATGTAACTATACGGAAAATATATCaaccaatataatatatatttgtaCATAGCGTGTTTCAGTATTAAAAAATCAAAAGGATAATTGTAAGTGTTTACAAAAGGATgtattgtattttctgtattgcaCATAGTCATACTATCACATGTTTCTGCCATGTCTCCATACGGACCGAGGAGACTGTGTGGACACTTGGATGTGTTAACTCTATAATACTGCGCGTGTGGAAGTGGTGCACTAGCAGGTTGGACTTTGAAATGTCAATGTGGCTAAAAAGCACGGCATCAGTAATGTCACAGTACATGACAGTCTTAGAGcaggtgtactgtatgtgttgtgttgAGACATGGATAGGCGTGACTGCTTACCAAACATGTATGTAATCACCAGATCCATATCCACAACAATGCAATGATTCACACTTGTAGTTCACCTTCCTCAGAACTAGCTCAATAAAACATAGTCATCATAATAATACAGAGAAAGGAATTGATTGACTCAAATAACAATGTCATCCCATGTATCTGGCAGCTGGCACTTCAACCAAAGGAATTTGTGGTTGTTCCTACGAGTATTTCCCCATCACATCCATTCCCCTGGGTCTGACACTAAAAACAGAATCATTTAGGGGTGGTAAGGGAACAACATAGTGGCTCTCTAACCACAAGATGGCGGCATCCCACATCACctatttggagaaaaaaaaatgtgtgtgaagTTGAAGGTAGGAGACACACAGCTAGTTAACCTTGGGGGAATCTCTAGACTGCCATGTCAGAACGTCTACCTTTGGAAAACATCCAAACAACATTGATAGACATGTGTAAGATAACCCTGTGGTTTTAGAGGACTTCAGGTGGTTAGCTGCAGAGGACAACCTCATTGCCCCCTCCTAGATTGTGTAGTTCAACCATCCTGCAAAGTGTGCATGTGTATTTTGGTAGCTTATTTTGTCACAGCTGTATGAGAAGTGTTGCGTTTTGATTCTCCCCGCTAGTTAATTCAGTCCAGTCCAACCTAACGTCCAGCTCAGTCTCCAAAGCACACACTGGTTCTAGTCCCTAAGTCTCAGAAAGGAAGAGACAAGCAACCCGTGAAACAGCAAGTGTTTGTGTTAACTTCATGGGGTAAGGTCAACCTGGAAGAAGTGATCTCTGTAAGACCCAGGGCAGAAGGAATGGGATAGAGCACTATGACCACTAGAAACACGCATGGTCACGGTCCCAGCGTCAAACTCTTATCTGAACACTTTTGTAAACCTCCACAGTGCAGTGGGAGCCTTTTAGAAGAACTACCTGTTCTGATGAGTCTTTTTTCATAACAGTCCTCTGGCATCATTATCCCATGCCTAGCCCTTGTACAGTTAGTTGTTTCTTGGTCCCAGATCAGGGGTTCTTACTGTAGTCTCTGCTCACGCTGTAGATTCCACACAGTAGTGCTTGAATTGTTGAACAGATGTCAGGCCGTCCTGTTCTCAATATCTcactcgctctcagtctcccaaaACCACATATAcagaggcacgcacacacacatgaacatacaTTCACAGTGGTAGATGGGAGGTTGGCAGACAGGGTCCCAGGTGCTGAGTGTTGActtgctggagagagagagcgaaagagagaggggggcatggTTTAGAAAGCCAACAGTCTGGGCTCTTCTACACATACACAGGCTCACAGCCCTCCccctgctcttcctcctGGTGCAGAGGGTCTCCCAGGCCCGGGTGCTGTCTCCGCTATCACTCCACGCCCCGGgacccccttcctcctccactgGGTCGAAGTTGGAAGTGTCCATGGGGTGGGCAATCTTGGGCCGGTAGGGGGCGGGCTGGGTGCGCAGGTTGCTGGAGAAGTCCATCTGGTCGAAGAAGGGATGAGTTTTGATCTCGCCGGCGCCGTTGCTCCCAAGACGTTCCTCTGGGGAGCAGCAGAGACGGCCGATGATGTCGACAGCCTCGGGGCTGAGCTTGATCTGCGGGGGCACCTGCAGCG

Function

NR:

description
PREDICTED: serine/threonine-protein kinase LATS2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055003 True 3223 lncRNA 0.43 2 27573559 27576953

Neighbor

gene id symbol gene type direction distance location
LOC110501675 LOC106582077 coding downstream 28977 27539464 ~ 27544582 (-)
LOC110501672 NA coding downstream 55930 27501691 ~ 27517629 (-)
LOC110501670 LOC106582076 coding downstream 74934 27492474 ~ 27498625 (-)
LOC110502080 wars2 coding downstream 136080 27371067 ~ 27437479 (-)
LOC110501665 NA coding downstream 208966 27340833 ~ 27364593 (-)
il17d il-17d coding upstream 70777 27647730 ~ 27648708 (-)
LOC110502081 ift88 coding upstream 72281 27649234 ~ 27662614 (-)
LOC110502082 LOC106582065 coding upstream 129978 27706931 ~ 27740630 (-)
LOC110501685 LOC106582064 coding upstream 164422 27741372 ~ 27770708 (-)
LOC110501686 LOC106582063 coding upstream 199618 27776571 ~ 27817123 (-)
G1795603 NA non-coding downstream 53661 27519665 ~ 27519898 (-)
G1795601 NA non-coding downstream 79127 27494157 ~ 27494432 (-)
G1795600 NA non-coding downstream 79421 27493913 ~ 27494138 (-)
G1795591 haox2 non-coding downstream 108721 27463145 ~ 27464838 (-)
G1795660 NA non-coding upstream 33050 27610003 ~ 27610400 (-)
G1795689 NA non-coding upstream 67870 27644823 ~ 27645027 (-)
G1795703 NA non-coding upstream 98183 27675136 ~ 27675378 (-)
G1795707 NA non-coding upstream 105222 27682175 ~ 27682438 (-)
G1795708 LOC106582078 non-coding upstream 106127 27683080 ~ 27688572 (-)
G1794978 NA other downstream 287464 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1861940 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2587291 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2715674 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2723807 24848591 ~ 24849752 (-)
G1795850 NA other upstream 403711 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 432702 28009421 ~ 28019116 (-)
G1796204 NA other upstream 757271 28334224 ~ 28334621 (-)
G1796239 NA other upstream 857962 28434915 ~ 28451815 (-)

Expression


Co-expression Network