G1795708 (LOC106582078)


Basic Information

Item Value
gene id G1795708
gene name LOC106582078
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27683080 ~ 27688572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055084
aacatttattaaacAGTCTCAAGACTGGGGGTCAAAGTGCAGATAGctgataaaaaaatacaaatcaaaCATCCTTCAAATTAATATCTATCAGCTTTCTAACTGCTGAAGTGTGACCATGAGGCTTTCAAAATGTTGCATTTACAGATATCCTTTGGCATTTCCTCTAAACAATCACAATACAAATAGCACCTCAACTGAATATTGAGAGAAAGTTAGCCTACGGTTTGCTTTCCATGACAATGTCCAAATCATGAGCCATCACAAAATGTGTGGGATGCATCTCACTGGTAAGTGTCCCTACGTCTTCCCAGGTAACAGTCAGATTGTCACTACAGTGATACAAGTTATGGTGTTCCAACTTCTACATGTATGTTTGGACGGAGCACATTAAGCCATTTTTGCCAGTAGATCAGTCTGCTTACTCACATTGAAAGAGGTACACTGATTAGTTCAGTGGCTAAAATAAGCAGCAAGCTGAAAGACAACACCCCCAGTTAGGCTCTGTAGCCAGGTTTACCACCAGTCTTGACAACAATAGGCCATGTCTGTCACAGTTGGCATGCTCAAAGGGCCAGTTTCCAGGACCCAGTTTAAGCCTACTCTTGGACCAAAAAACACTTTACAATTAATATTCCTAATTGAGCATGCCATCTAGTCTAGGCACAGGCTTCATCTGGGTCCAGGAAACCTGCCCAGAATGTTCAACTGGATCAGCCATCTTCCCTGAAACATTGTGCTCAATATACAGCATCAGGTACTATTTGACACTGCTGATAGCGACTCTctcaaggcactgcatcttaaaATTGCTTTGGTACTTGAGAAATTCCACTCGTCACTGTTAGAATTCAGGCAGATATGTGTACACGGGTGATCCTCAAATAGAACTTGgagcaaaactgcacatttgtgAGTTTCTGCTTTGGAAAAGTCTCCCACAAAAGCTGAACACAATGTTAACCAATTCTGGTTGCTCTCCACAATAAAACAGCAAACTCCTGCAAACACATTGTAAACCAGAAGGTGGCACTCTAGACCCATTTCTCACTTCTGTTCAACCTACCACTCCCTGAACAGACATACAGCTCAAACATACAAGCACCTTAAATTGATATCAATAACAATAATACATCCAATTCTAGCACGTTCACTTTTAAAACTCAAAAAGTAGTTTAGGGCACTGAGAGAGAAATATCCTCTACATCCTCAGCTGCTACAGGCATCTAGAATCCAAGTATGGTCTCATCtcatggtaacaacacactgaTAGATTTCTACTCCCTAGTTATGTGTAGTCTCTAATGAAAAAGAACAGGCACTGGGCTGTCCTCACACAGTCTTGTTGCTGGAGGAATCCGTAACAGACGACAGCAGCATCTGATTCTTTTTATTCTGTAGTAGAGACTTGTCCGGGGCCACATGATCAGGGTGAGCATAGGTACGGCTCTTGGAAATCCTGGTGGAGCACCTCATCAGGGCCTTGGCGATGAGGTAGGCCAGCTCGGCCACATTGAGCACCATGCAGATGGCAGAGGAGACCACCATGAAGATGGTGAATATGGTCTTCTCCGTAGGTCGTGAAATGAAGCAGTCCACCTTGTTGGGGCAGGGCCATTGCTCACACTTCACCAGACGAGGCATCTTGAAGCCGTCGTAGACAAAGTAGAGTGCGTACATAAAGCCAGCCTCAAAGATGAGGCGGAAGAACAGGCTGCAGGTGTACGTCCACCACAGAGGCCCAGTGATGGACAGACGCCGCCTCTTTAGAGTCTCCAGGTCCACCTGCCTGGTCTTGTCATCCCCACCGCTTCGTGAGGCCGCGATGATGTGCCGCTTGTCCCCACTCTTCCTGTAAGCCACATGCATAGCCACCAGCAGGGCCGGTGTGGACACAAAGATCAGCTGTAGGCACCAGAGGCGGATGTGTGACACTGGGAAGAAGTGGTCGTAGCAGACGTTCTTGCAGCCGGGCTGCTGGGTGTTGCAGGTGAAGTCAGCCTGCTCGTCTCCCCACACGCTCTCTGCAGCCAGTACCAGGATGGTGATAcgaaagatgaagaggacagacagCCAGATCTTCCCCAGGCTGGTGGAGTGTTTGTTCACCCCGCCCAGCTGGGTGTACAGAGCAACCCAACTCATCTCTAAGGCAACTTTGTCTGAGACCACCTGGAATATCAGCAAACTTCCATCAACTTCAATTTTCGGTTCTCTTTAACGCCGTCTTGTCAAGGAACTCCAAACGTAGAAGAGTAAAGTGTGATTTGTTTGGAAACAAGTCCAACTGAGAAAGCTGCGTGTGTGAGCTCTGGAGCGATGCACCTGAGTTTTTATAATCTTCTCTTCTTGAGGATCCACCCGCTAGGGGCGAGACCAAGGATAAGAGCACTCATCAACTCCACTCGCTAATCGGAATACCGGGACATGTTCAGGACAGAGTAGGCCTATGTATTTTTATGACTACCAGAATCGACTATTTGGTTTcgaagtattgaaaccaaaccattaTGATTTCAATTAAAAGTATTTTAATAAACAACCGGAAAAGGTTGTCATCATTTGAAATGggttacatgtcatattaaacagcatataaacactaacTAGGTCAGGAGCCAAACAAGTAGCCTGAGAAGGAACGAAAATgatttatttaggctatattatttcaaggctatagtcTACAAAGAAATACAATACATCGTAAAGCATTTGCGAGTGCGACACACTAGGCTGTCGGACATTAAGCCTTAGCATTTAAATAACATTTcgttgtattaaatcattatagtctataaaTTGCACATCTAGGCTGTGACTTACTTATAATTAAAATCAAATGAAACGAAAAATGCCTTATTAGGCTCCATCTACAGTCCCtttgaattcatttttagaaacatGAGCTTGGCCTGAGTCACTGCTTTCAGGCTCAGGTGCCTGGAGAGCATGCCAGCAGCGGGAGAATATGTGCTCAGTGCTTGCAGAGCCACTGGGAACGCTAAACACCCTTGGGacactcttgccaggctgggcagggatgagtatgtgttttttttttctgtagGTAGGCCTAAAGTATTTTTAGGTAAAATAACCCTATCAAAACGGAAAGCTCCTTGCAAGAGGTAACGTTAATATGCCAGGCATATTGAGCCAAAATTTATTGATggcctattgtatagataatagaacaAAAATTAACGAAACTTAATCTGATTTTTAGTTTATAAATAGTTTCCTACAATGACACACCTAGCTAGCTACCCATCTCGTTTCATTCTGTTAGCATTTGCACGTAATAAGTACACGATAACGGCTTTCGGGATAACtttcttttcagattccacaacgATTCTTCAGTTCACCGCACTCccttttttttaaaacctttaactaggcaagtcagttaagaacacattcttacaatgacggcctaccagaaggcaaaaggcctcctgcagggacgggcgctgggattaaaaatacaaatataaaacaaaacacacatcacgacaagagagattTAAGACAACACATCACTTACTCATCTTTGTAAATCACCTTGATTtttttatcagtttctttatgaaaatattttgcATACTAAATGATAGTAGCCAAAGCAAAGagctatagcagcacacaagtcgaatacaaatgcatgctgggccggCGATGCCCTGAGCTCGTCAAGTGAGCGCTACTGGAGAGAAACTGGAGCGGGCGAGAAGGACCATGCTCCCGCCTTTGGGAAACTCGCTCCACTTTTCGCTCTGTATGATTAAACATTCTGAACGTTTCATTTCACTGAATACACCCTGTGATCACATTAACTTCAAATGTACTGTTGTCAGATCGGGACACTTGAATTCGGTGTTAATTACTGGTCAAGCATACTGTATAAAGTACATAGTCATCATGAGTCACAAGATCACCAGAACAAATGTAGAGGGAAGATATTTTTTTTGATGTTCAACCCATTTAACAGATCCCAATCATAGTTGTCCAAAATGTGATGTAACACAATATGAAAAACCCTATGATGTATTTTCAATCAATTCATATGTTTGTTGTTTATCTTTAGTTCTTGATAAGGACAATTCAAATCTATTCCAATCCTAGAGAAATTCaacatttgaataaaaaaaattaaaaaatcattAAACAAGTTTATCACATTAACAATTCATATTCACAATTCAAGAAACCATTGTGGTATGACCAAACCATTACTTCCTTTGTCTGATCATCAACTTGTTGATTGCATAAAACATGGATATATTTCTGAGAAGGCATGGCAATCAATCCCCAGATtggtttattgtgtgtgtgggcTCCTACAGCAACATCCCAGATTAGTTGAGCGATTGTGTGTGAGGACTCAGGGCTACAGTATTCATTACCATCCCCAGTGTAGGCACCATTGAGAGATCAGATCATTCTCATCACCATGCTCCTCAGGCTGAGTGAGGGTCAGTGAAGGCCTGAGTAATGGACAGAAGAGTCCCAGACACAAGTCCATCTTGTACATCAGTGGTGTTGATAGTCCAGTGGTCACTTCTTGAGCTTGGCCAGGCCCATGAGGAGctgatccctcctctctctcctagcaGACAGGTGCTGCGGGTCAGCTCACACATCTCCTGTAGGGATAcatcagaggagggagggagaagatgaGATGAGTAGAGAGTAGTTTTAGCTGCTGGGATTTCTGTCTGCTGTTGGCCTGGTAAAATATTTCCTTGGTTGGATACACTTGGATGCATTAAATTGGTCCAATTTGAAATATTTTCTGCTTGTGAAATATTTTCTGCCTATGGTCAGGGTGTTCTCTCACGACAGCCTCCATCTGTGGATAATAATGTTTGAACAGCCTGATGGCATGTGGTTGAGTAATGTCTAATTAACAGAGTAAAGTTCTAGGAGGAGGAAATATG

Function

NR:

description
gap junction beta-2 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055084 True 4946 lncRNA 0.43 2 27683080 27688572
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110502081 ift88 coding downstream 20466 27649234 ~ 27662614 (-)
il17d il-17d coding downstream 34372 27647730 ~ 27648708 (-)
LOC110501675 LOC106582077 coding downstream 138498 27539464 ~ 27544582 (-)
LOC110501672 NA coding downstream 165451 27501691 ~ 27517629 (-)
LOC110501670 LOC106582076 coding downstream 184455 27492474 ~ 27498625 (-)
LOC110502082 LOC106582065 coding upstream 18359 27706931 ~ 27740630 (-)
LOC110501685 LOC106582064 coding upstream 52803 27741372 ~ 27770708 (-)
LOC110501686 LOC106582063 coding upstream 87999 27776571 ~ 27817123 (-)
acbp acbp coding upstream 145935 27834422 ~ 27838573 (-)
LOC110501689 LOC106582060 coding upstream 215010 27903582 ~ 27912919 (-)
G1795707 NA non-coding downstream 642 27682175 ~ 27682438 (-)
G1795703 NA non-coding downstream 7702 27675136 ~ 27675378 (-)
G1795689 NA non-coding downstream 38053 27644823 ~ 27645027 (-)
G1795660 NA non-coding downstream 72680 27610003 ~ 27610400 (-)
G1795632 LOC106582069 non-coding downstream 106127 27573559 ~ 27576953 (-)
G1795771 NA non-coding upstream 176071 27864643 ~ 27865088 (-)
G1795777 LOC106582058 non-coding upstream 242467 27931039 ~ 27935284 (-)
G1795871 NA non-coding upstream 335166 28023738 ~ 28023937 (-)
G1795885 LOC106582057 non-coding upstream 355679 28044251 ~ 28044507 (-)
G1794978 NA other downstream 396985 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 1971461 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2696812 24985959 ~ 24986268 (-)
G1792345 NA other downstream 2825195 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 2833328 24848591 ~ 24849752 (-)
G1795850 NA other upstream 292092 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 321083 28009421 ~ 28019116 (-)
G1796204 NA other upstream 645652 28334224 ~ 28334621 (-)
G1796239 NA other upstream 746343 28434915 ~ 28451815 (-)

Expression

G1795708(LOC106582078) Expression in all Baseline Samples

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G1795708(LOC106582078) Expression in each Bioproject

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G1795708(LOC106582078) Expression in each Sample
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Co-expression Network