G1795777 (LOC106582058)


Basic Information

Item Value
gene id G1795777
gene name LOC106582058
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27931039 ~ 27935284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055156
TTGAACCTATTGCACAGAGTAGTGCACAATACAAAAACAGAGTAGTGTTGCCTTTTTTCCAATATAAAAATGTTAATTTGGAAACATGGTTTAGatgtagtagataatatactccCATACTCCCTCTAACTGTCGAGGGAGATCACATATATTTCGTTGTGGTATTCCAAGATATCGCGAATCCAACACGAGATGAGTCATATAGGCCAATCTTTCAGGCCCACACGTAGTTGAGGCAATACATCAAGCGGCAGGCaacgaaaaaaaaaaacagtggcCTACTGATTGTTAGGGACTCGCAGTTCAGGAAGAAAGTATAGTCTATAAGAGAGAGATTCATAGATGTTTTTTTTTCAGGCTGTTATTTCGATAAAATCTTTGGCTTGAAGTGGCAGATCACGCAGTCTGTAAATTCACCGAGGTTTGATATAAGAGAGAGATCACACATTAGGCCTAAAGCGACAAAGATAGCAATCATATCATTATCCAAGTGCAGGGTGAGTAGTACTGTATCCCCTTCTCCTTAAATTATCTATACAGTCTAATTTTTGGCTATTCATTTTCCATCATGTTCGTAGCTTGTATGCATATTTGTATCGTTTATGTTCATACACAAGCCTATCAACAAATTGAACATATTTTACACTAGCCTTGACTATCCACAAATATTTCGTCCCCAAAAGGTGACTCCTGCACCATAGTTTTCCGAGTTTGTAGCACATTTGGGGCAAGCGAAGGCTCAGTCACTCTCCTCCTTGTCTTCCTGAATGGTGGTGGTGGAATGGTTGTACAATCCTTGCGCCATGAGCTGGAGAGCCAGGCCGTTCTTATAGCCGTTGGCCTTTTTGATTTTGGCCCGTTTGTTCTGGAACCAGATTTTGATTTGTGACTCATTGAGGTTGAGCTCCTGGGCTAGAGACTGTCTCCTCTGCTCGGTAATGTAACGGTTGGCCTGGAACTCCGTCTTCAGTCTTTGAAGCTGCTCAGCCGTGAACGCCGTTCTGGGTCGCTTGTCTTCCTTTTCGTTTTTCGTCTTTTTCAATTTCCGTGTCCTTGGGCCTACAGATGAGGGCCTGTCCGAGTATCTAGTGCAATACACCCAGGCAGGCCACAGCAGCGGTTGGGACTCGGGGGAGGGCGCTGCGCCGCCACTAACGCCGTTCACAACCATAACAGGAGAAGTGTTCTCGCCGAACTTGGGCGTGCTACCTCCGGAGCTGTCGTTGGCTTTCGAGGACGAGGTGCTCTTTTTGGGGGTTGGAGACAAGGCcaaggacgaggaggaggaagaagtgcTGTCGCTGCTGCAATTGGAGTCCTGGCATGGCGTTCCAGGATGAGTCGGTCTGGCGACCAAAGGGTGGGCGCGTTCTCGGCTGGAAGTCTGCGACCTCTCCCTCGCACCTAAGCCCTGCTCCTTCCTGCAGCCGAAATCTGGCCGTAGAATATTGTCAATAAAAAAGTTGGTGGTTCTGTGCGCCTGCTGCGCTGCTTGGAGAGGCAGGATGGGTGGCGAAGGCAGACTTGGAGAAGGAGAAACGCTCTCCCCTTCACTCAACTCCGGGCTGTGTACATCCCTTTGCCCCTCCATCACTGAAAATGGTTGCAGGCTCCCAACCAATTCCACTTGTTTGTGTGTATTTGAATCCAAATATGACAAGAATGAAGTTATACGGTGCACACTAAAGGATAATTACTCCCTCTCTGATTTGGTGCACATATTGATTTCTAAATTGTTGACATCCCTCGTGCGTAACGCGCACCAACGTGTCATGGTAGTCGACTATGACAAGACTGACAAGGAATCGCACGCTCCTCTCG

Function

NR:

description
homeobox protein engrailed-1-B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055156 True 1821 lncRNA 0.47 2 27931039 27935284

Neighbor

gene id symbol gene type direction distance location
LOC110501689 LOC106582060 coding downstream 18120 27903582 ~ 27912919 (-)
acbp acbp coding downstream 92466 27834422 ~ 27838573 (-)
LOC110501686 LOC106582063 coding downstream 113916 27776571 ~ 27817123 (-)
LOC110501685 LOC106582064 coding downstream 160331 27741372 ~ 27770708 (-)
LOC110502082 LOC106582065 coding downstream 190409 27706931 ~ 27740630 (-)
LOC110501691 LOC106582059 coding upstream 74137 28009421 ~ 28019116 (-)
LOC110502083 LOC101162407 coding upstream 123609 28058893 ~ 28062683 (-)
LOC110501696 LOC106582163 coding upstream 603421 28538705 ~ 28548565 (-)
trnan-guu-200 NA coding upstream 784775 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 884046 28819330 ~ 28826708 (-)
G1795771 NA non-coding downstream 65951 27864643 ~ 27865088 (-)
G1795708 LOC106582078 non-coding downstream 242467 27683080 ~ 27688572 (-)
G1795707 NA non-coding downstream 248601 27682175 ~ 27682438 (-)
G1795703 NA non-coding downstream 255661 27675136 ~ 27675378 (-)
G1795871 NA non-coding upstream 88454 28023738 ~ 28023937 (-)
G1795885 LOC106582057 non-coding upstream 108967 28044251 ~ 28044507 (-)
G1795896 LOC106582055 non-coding upstream 137591 28072875 ~ 28075589 (-)
G1795914 NA non-coding upstream 160145 28095429 ~ 28095647 (-)
G1795920 NA non-coding upstream 170443 28105727 ~ 28105945 (-)
G1794978 NA other downstream 644944 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 2219420 25709599 ~ 25744218 (-)
G1792433 NA other downstream 2944771 24985959 ~ 24986268 (-)
G1792345 NA other downstream 3073154 24856824 ~ 24857885 (-)
G1795850 NA other upstream 45380 27980664 ~ 27981379 (-)
G1796204 NA other upstream 398940 28334224 ~ 28334621 (-)
G1796239 NA other upstream 499631 28434915 ~ 28451815 (-)
G1796401 NA other upstream 690854 28626138 ~ 28626891 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000353_01217647_01220529 NA coding CI01000353 null 1217174 ~ 1221247 (-)