G1795484


Basic Information

Item Value
gene id G1795484
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27987418 ~ 27988471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2054846
TGTTAACTGTGCATTGTTGGAAAAGAACCAGTAAGGAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGAACCAGTAAGGAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTAAGTAAGGGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTAAGTAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTATGTAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTAAGTAAGGGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTAAGTAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTAAGTAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGGACCAGTAAGTAAGTGATGTAAGTAAGCACTAACACCAGTCTAAAGGaccagtaagtaagcatttcactgttagtctacacctgttgtttacgaagcatgtgacaatttgatttgaatgtacTGTTCCATAGTGGGGAGGCTTTTCTTTTACTATCCGTCTTTTTATGGctcagcatacagacagacactcttCCTGGCACATCAAACCTCCCAGACTCGGGACAGGTGgccagagaggaggggggagaagaggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2054846 True 649 lncRNA 0.42 2 27987418 27988471

Neighbor

gene id symbol gene type direction distance location
LOC110501690 LOC106582058 coding upstream 52102 27930952 ~ 27935316 (+)
LOC110501688 LOC106582045 coding upstream 104518 27880850 ~ 27882900 (+)
LOC110502120 sctr coding upstream 159824 27799755 ~ 27827594 (+)
trnaa-ugc-173 NA coding upstream 242057 27745286 ~ 27745361 (+)
LOC110501682 LOC106582074 coding upstream 291033 27688732 ~ 27696385 (+)
ccdc93 ccdc93 coding downstream 39991 28028462 ~ 28036764 (+)
LOC110501693 LOC106582057 coding downstream 48446 28036917 ~ 28052019 (+)
LOC110501694 LOC106582055 coding downstream 83949 28072420 ~ 28076571 (+)
LOC110502084 NA coding downstream 247749 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding downstream 301754 28290225 ~ 28290297 (+)
G1795476 NA non-coding upstream 7042 27980131 ~ 27980376 (+)
G1795411 NA non-coding upstream 74543 27898367 ~ 27912875 (+)
G1795358 NA non-coding upstream 152112 27834522 ~ 27835306 (+)
G1795356 NA non-coding upstream 221359 27763426 ~ 27766059 (+)
G1795519 NA non-coding downstream 54878 28043349 ~ 28043675 (+)
G1795544 NA non-coding downstream 98911 28087382 ~ 28087586 (+)
G1795546 NA non-coding downstream 99708 28088179 ~ 28088401 (+)
G1795549 NA non-coding downstream 102551 28091022 ~ 28091293 (+)
G1795949 NA non-coding downstream 159753 28148224 ~ 28156995 (+)
G1793717 NA other upstream 1671175 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2255664 25731326 ~ 25731754 (+)
G1792649 NA other upstream 2690861 25294546 ~ 25296557 (+)
LOC110501609 fam155a other upstream 2973763 24848514 ~ 25013655 (+)
G1795550 NA other downstream 103094 28091565 ~ 28092116 (+)
LOC110502085 LOC106582160 other downstream 989419 28977890 ~ 28984226 (+)
LOC110501700 LOC106582186 other downstream 1020153 28997763 ~ 29010281 (+)
G1797582 NA other downstream 1755721 29744192 ~ 29744854 (+)

Expression


Co-expression Network