G1795896 (LOC106582055)


Basic Information

Item Value
gene id G1795896
gene name LOC106582055
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28072875 ~ 28075589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055283
GACTTCGTAGATATAATGTAAAAGGTGTATCTATGCAGGACTCCCTTGAAAAAAAATAGATTTTGGTCTCAatgactacattcctaaataaaggCTACAAATAATTAGAACAAATAGATCAGAGGTTACTGAGGTCAATTACAGTATAATGATTTATTAGCTGGGGGGGAAAATGTACCAAACTAGAGAACAGTTAAATAGTCCTTTTCTGACAATGAGTAAACCTAGAAGTAGGCAACTTATGAAGCATTACATGATAATTCATGTACTGTACCATTTTATAAATCATATTTAAAATGTCTCCATAGTTAGGATCCAGACCTGCGGACCCTCGGTTGAAGACCCCTGCTGACGATCACACCAGGTCCCCCATCATCTACAGAGGAGCTGCAGGTCATTGGAATCCCATGTTAATATTGGAGACAGCAGGTTCTCTCCCACCCTGAGAGCCTCCTGGCCCCTCACCTTCAAGACCATGAACTTGATCTTCCATTTGTTCTGGTCCAGTGGGGAGCGTATGAGGCCAAACGCCTGCTCATAAATGCCGacacattctctgtctctgtggatggtCCCTGCCACAGCCACCAGCACCAGGCCGTGGGGGGAGGGCAGGGCCTTCAGGCCACCAGGATCCAGGTTGGGGCTCAATAGCAGCCTCTCGTCCCTCGCCAGGGCCAGGAGACGCAGGCTGGTCATTGCTGCTCCTTCGTAGAAATATAACCATTCACAAATTGCATCTATGGATGCAAGTACTGACCATCCATGACTGTCATGTCCTGACTTTAgttccatttttatgtctctgttttagcttggtcagggcgtgagttggggtgggcattcaatgtttttgttctatgtgttgtatttctgcttttggcctggtatggttcccaatcagaggcagctgtcaatcgttgtctctgattgagaaccatacttaggtagcctgtgttcccactatgacttgtgggtagttgttttctgtttagtgtatgtcaccttgcagaactgtttcgtttcttcCATTCACGtcgttattttgtttttgtgtgttcagttaataaattaacatggacacttaccacgctgcgcattggtccgatatttcataCTCGTCGTCAGACAACGAAGAGATGCGTTATAATGACATCAAATGATTGTTTTTTttaggctatatagtgtttgtttacg
>TU2055282
GACTTCGTAGATATAATGTAAAAGGTGTATCTATGCAGGACTCCCTTGAAAAAAAATAGATTTTGGTCTCAatgactacattcctaaataaaggCTACAAATAATTAGAACAAATAGATCAGAGGTTACTGAGGTCAATTACAGTATAATGATTTATTAGCTGGGGGGGAAAATGTACCAAACTAGAGAACAGTTAAATAGTCCTTTTCTGACAATGAGTAAACCTAGAAGTAGGCAACTTATGAAGCATTACATGATAATTCATGTACTGTACCATTTTATAAATCATATTTAAAATGTCTCCATAGTTAGGATCCAGACCTGCGGACCCTCGGTTGAAGACCCCTGCTGACGATCACACCAGGTCCCCCATCATCTACAGAGGAGCTGCAGGTCATTGGAATCCCATGTTAATATTGGAGACAGCAGGTTCTCTCCCACCCTGAGAGCCTCCTGGCCCCTCACCTTCAAGACCATGAACTTGATCTTCCATTTGTTCTGGTCCAGTGGGGAGCGTATGAGGCCAAACGCCTGCTCATAAATGCCGacacattctctgtctctgtggatggtCCCTGCCACAGCCACCAGCACCAGGCCGTGGGGGGAGGGCAGGGCCTTCAGGCCACCAGGATCCAGGTTGGGGCTCAATAGCAGCCTCTCGTCCCTCGCCAGGGCCAGGAGACGCAGGCTGGTCATTGCTGCTCCTTCGTACTCTTCTGTATACTGCTCTCCGGCGCTGGAGAGAAGACGTAGCCTCACATCCTCCCAGAAGTGTTGTGGTCCCCACTCCTGAGGAGGCTGACCCAAGGAGGGGTTCAGACTGTTGAGAAGCTGGAAGAACCACTGACAAAACTGTCTGGCCAAGGCCAGGTGGTCAAAGCCAGCACTGTATGTCGCCTCAGAGAAAACAGAGACACTCTCACTTGTTCTCAGACCAATTGGTCTCAAACTAGTCTCAATTTGTCTCACAATAGTCACAGCTGGTCCTGGATTGGTCTCAGCTGCTGGGCTTTGAAGGTCCAACATCTGGGATGTGTAGTGCGGCTTAGAGTAGACAGGTTGAGGGGGGACATGTGCTGTTGGAAACCTCATTCCTTTCTGAGAATCTGCTGCTCTTgttaaagcactgaaggagacaTCTTCATACGCTTGTGGACACACCTGAAGATAACAGAGACAATGGAAAGAGGTGCATTTACCTCACCTCTTAGTTCCCTAAGTGTCCAAGTGTATCTGCTCCAAAAATACCTTCTCAATAGTCCAGACGTCAAGGGCCTTCTTCACTAGCTGGTCTTTGTTGCTGTTTTTGGGTATCACAACCCCCTCGTCCTCCGTCAGGTATTTGAGTATGAAGTCACGTTGAACTTTCCTGCGTTTCAGGAATGCCTCTGCATTCTCTGTGTTTGAAAGGATGGCATCAATTGATGCTGTAACATAAGAATATGACCCAAAGGACTA

Function

NR:

description
uncharacterized protein C3orf38 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055283 False 1197 lncRNA 0.44 2 28072875 28075589
TU2055282 True 1461 lncRNA 0.48 2 28073969 28075589

Neighbor

gene id symbol gene type direction distance location
LOC110502083 LOC101162407 coding downstream 10192 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 53759 28009421 ~ 28019116 (-)
LOC110501689 LOC106582060 coding downstream 159956 27903582 ~ 27912919 (-)
acbp acbp coding downstream 234302 27834422 ~ 27838573 (-)
LOC110501686 LOC106582063 coding downstream 255752 27776571 ~ 27817123 (-)
LOC110501696 LOC106582163 coding upstream 463116 28538705 ~ 28548565 (-)
trnan-guu-200 NA coding upstream 644470 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 743741 28819330 ~ 28826708 (-)
LOC118943585 NA coding upstream 1248556 29324145 ~ 29325269 (-)
LOC110501708 LOC106582177 coding upstream 1357963 29433552 ~ 29441071 (-)
G1795885 LOC106582057 non-coding downstream 28368 28044251 ~ 28044507 (-)
G1795871 NA non-coding downstream 48938 28023738 ~ 28023937 (-)
G1795777 LOC106582058 non-coding downstream 137591 27931039 ~ 27935284 (-)
G1795771 NA non-coding downstream 207787 27864643 ~ 27865088 (-)
G1795914 NA non-coding upstream 19840 28095429 ~ 28095647 (-)
G1795920 NA non-coding upstream 30138 28105727 ~ 28105945 (-)
G1795923 NA non-coding upstream 33915 28109504 ~ 28109880 (-)
G1795929 NA non-coding upstream 44939 28120528 ~ 28121557 (-)
G1795931 NA non-coding upstream 48452 28124041 ~ 28124253 (-)
G1795850 NA other downstream 91496 27980664 ~ 27981379 (-)
LOC110501685 LOC106582064 other downstream 329276 27741372 ~ 27770708 (-)
G1794978 NA other downstream 786780 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 2361256 25709599 ~ 25744218 (-)
G1796204 NA other upstream 258635 28334224 ~ 28334621 (-)
G1796239 NA other upstream 359326 28434915 ~ 28451815 (-)
G1796401 NA other upstream 550549 28626138 ~ 28626891 (-)
G1797146 LOC106582182 other upstream 1136075 29211664 ~ 29243649 (-)

Expression


Co-expression Network