G1795954


Basic Information

Item Value
gene id G1795954
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28148309 ~ 28164518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055347
atactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtgtagtataacactcatactgtacagtactgtgagaattctagttctcatcaacatgtatagtataatttctcatactgtacagtactgtgataattcttgttctcatcaacatgtgtagtataatcactcatactgtacagtactgtgagggttttagttctcatcaacatgtatagtataacactcatactgtacagtactgtgagggttcagGTTCTCattaacatgtatagtataatcactcatactgtacagtaccgtgagggttctagttctcatcaacatgtatagaataatcactcatactgtacagtacagtgagggttcttgttctcatcaacatgtatagtataatcactcatactgtactgtgtgggttttagttctcatcaacatgtatagtataatcactcatactgttaagtactgtgagggttctagttgtcatcaacatgtgtagtataatcactcatactgtacagtactgtgagaattcttgttctcatcaacatgtatagtattatCACTCATACTGttcagtactgtgagggttcgaGTTCTCATcatcatgtat
>TU2055354
atactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttttaGTTCTCattacatgtatagtataatcactcatactgtacagtaccgtgagggttctagttctcatcaacatgtatagaataatcactcatactgtacagtacagtgagggttcttgttctcatcaacatgtatagtataatcactcatactgtactgtgtgggttttagttctcatcaacatgtatagtataatcactcatactgttaagtactgtgagggttctagttgtcatcaacatgtgtagtataatcactcatactgtacagtactgtgagaattcttgttctcatcaacatgtatagtattatCACTCATACTGttcagtactgtgagggttcgaGTTCTCATcatcatgtat
>TU2055348
aacatgtatagtataatcactcatactgtacagtactgtgagggttttagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttttagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttatcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttttagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtgtagtataatcactcatactgttaagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatcaacatgtgtagtataatcactcatactgtacagtactgtgtgggttctagttctcatcaacatgtatagtataatcactcatattgtacagtactgtgtgggttttagttctcatcaacatgt
>TU2055356
atactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttttagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgttaagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatcaacatgtgtagtataatcactcatactgtacagtactgtgtgggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgtgggttttagtt
>TU2055352
atactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgaaggttttagttctcatcaacatgtatagtataatcactcatactgtacagtaccgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatcaacatgtgtagtataatcactcatactgtacagtactgtgtgggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttc
>TU2055350
atactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcaatcatactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttttagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagaattctagttctcatcaacatgtatagaataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtgtagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgtgggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatca
>TU2055353
atactgtacagtactgtgaaggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgagagttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtacagtgaaggttctagttctcatcaacatgtgtagtataatcactcatactgtacagtactgtgagggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgtgggttctagttctcatcaacatgtatagtataatcactcatactgtacagtactgtgaaggttttagttctcatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055347 False 850 lncRNA 0.35 4 28148309 28164518
TU2055354 False 735 lncRNA 0.35 3 28148309 28164518
TU2055348 False 587 lncRNA 0.35 3 28159663 28162626
TU2055356 False 668 lncRNA 0.35 4 28160836 28164518
TU2055352 False 495 lncRNA 0.35 2 28161124 28164518
TU2055350 False 1081 lncRNA 0.35 3 28161756 28164518
TU2055353 True 385 lncRNA 0.36 2 28161756 28164518

Neighbor

gene id symbol gene type direction distance location
LOC110502083 LOC101162407 coding downstream 85626 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 129193 28009421 ~ 28019116 (-)
LOC110501689 LOC106582060 coding downstream 235390 27903582 ~ 27912919 (-)
acbp acbp coding downstream 309736 27834422 ~ 27838573 (-)
LOC110501686 LOC106582063 coding downstream 331186 27776571 ~ 27817123 (-)
LOC110501696 LOC106582163 coding upstream 374187 28538705 ~ 28548565 (-)
trnan-guu-200 NA coding upstream 555541 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 654812 28819330 ~ 28826708 (-)
LOC118943585 NA coding upstream 1159627 29324145 ~ 29325269 (-)
LOC110501708 LOC106582177 coding upstream 1269034 29433552 ~ 29441071 (-)
G1795944 NA non-coding downstream 4371 28142470 ~ 28143938 (-)
G1795931 NA non-coding downstream 24056 28124041 ~ 28124253 (-)
G1795929 NA non-coding downstream 26752 28120528 ~ 28121557 (-)
G1795923 NA non-coding downstream 38429 28109504 ~ 28109880 (-)
G1795920 NA non-coding downstream 42364 28105727 ~ 28105945 (-)
G1795955 NA non-coding upstream 2263 28166781 ~ 28167069 (-)
G1796139 NA non-coding upstream 8246 28172764 ~ 28174542 (-)
G1796144 NA non-coding upstream 22132 28186650 ~ 28186965 (-)
G1796153 NA non-coding upstream 44233 28208751 ~ 28209103 (-)
G1796156 NA non-coding upstream 53737 28218255 ~ 28218458 (-)
G1795850 NA other downstream 166930 27980664 ~ 27981379 (-)
LOC110501685 LOC106582064 other downstream 404710 27741372 ~ 27770708 (-)
G1794978 NA other downstream 862214 27268662 ~ 27286095 (-)
LOC110501627 LOC106582113 other downstream 2436690 25709599 ~ 25744218 (-)
G1796204 NA other upstream 169706 28334224 ~ 28334621 (-)
G1796239 NA other upstream 270397 28434915 ~ 28451815 (-)
G1796401 NA other upstream 461620 28626138 ~ 28626891 (-)
G1797146 LOC106582182 other upstream 1047146 29211664 ~ 29243649 (-)

Expression


Co-expression Network