G1796401


Basic Information

Item Value
gene id G1796401
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28626138 ~ 28626891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055842
caataacacagtggcctcgatCATGATTAAATtagagaagtttggaaccaccaagactcttcctagagttggccgcccggccaaactgagcaatcaggggagaagggcattggtcagggaggtgaccaagaacccaattgtcacactgacagagctccagagtgcctctgtggagatgggagaaccttccagaagaacaaaaATCTCTGCAGCAGTTCGCCAATCAGGCctatatggtagagtggccagacggaagccactcctcatgtTAAAGGTACATGactgcctgcttggagtttgtctaaaggcacctaaaggactctcagaccatgagaaacaagattctctgttctgatgaaaccaagatggaactctttggcctaaatgccaagtgccacgtctggagaaaaccaggcaccatccctacggtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggataaaaGGAGAGATGAACGTAGCAAACGACAGAGAGAttcttaatgaaaacctgctccagatcgctcaggacctcagactggggcgaaggttcaccttccaacaggataacaaccctaagcacacagccaaaacagtgcaggagtggcttcgggaaaagtctctgacAGAGCTtaaatctgcagagaagaatgggcgaaattccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagactcaag

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055842 True 754 TUCP 0.49 1 28626138 28626891

Neighbor

gene id symbol gene type direction distance location
LOC110501696 LOC106582163 coding downstream 77573 28538705 ~ 28548565 (-)
LOC110502083 LOC101162407 coding downstream 563455 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 607022 28009421 ~ 28019116 (-)
LOC110501689 LOC106582060 coding downstream 713219 27903582 ~ 27912919 (-)
acbp acbp coding downstream 787565 27834422 ~ 27838573 (-)
trnan-guu-200 NA coding upstream 93168 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 192439 28819330 ~ 28826708 (-)
LOC118943585 NA coding upstream 697254 29324145 ~ 29325269 (-)
LOC110501708 LOC106582177 coding upstream 806661 29433552 ~ 29441071 (-)
dnajc15 dcj15 coding upstream 979172 29606063 ~ 29619908 (-)
G1796384 LOC105896813 non-coding downstream 14049 28611745 ~ 28612089 (-)
G1796377 NA non-coding downstream 17898 28607893 ~ 28608240 (-)
G1796376 NA non-coding downstream 18716 28606304 ~ 28607422 (-)
G1796363 NA non-coding downstream 28441 28597490 ~ 28597697 (-)
G1796328 NA non-coding downstream 41356 28565325 ~ 28584782 (-)
G1796418 NA non-coding upstream 18180 28645071 ~ 28645297 (-)
G1796431 NA non-coding upstream 28325 28655216 ~ 28655542 (-)
G1796435 NA non-coding upstream 30367 28657258 ~ 28657479 (-)
G1796451 NA non-coding upstream 38870 28665761 ~ 28666014 (-)
G1796481 LOC106582162 non-coding upstream 75041 28701932 ~ 28702757 (-)
G1796239 NA other downstream 187367 28434915 ~ 28451815 (-)
G1796204 NA other downstream 291517 28334224 ~ 28334621 (-)
G1795850 NA other downstream 644759 27980664 ~ 27981379 (-)
LOC110501685 LOC106582064 other downstream 882539 27741372 ~ 27770708 (-)
G1797146 LOC106582182 other upstream 584773 29211664 ~ 29243649 (-)
G1797556 NA other upstream 1032576 29659467 ~ 29660947 (-)
LOC110501714 LOC106582170 other upstream 1211386 29835498 ~ 29846456 (-)
G1797936 NA other upstream 1344667 29971558 ~ 29978535 (-)

Expression


Co-expression Network