G1796481 (LOC106582162)


Basic Information

Item Value
gene id G1796481
gene name LOC106582162
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28701932 ~ 28702757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2055922
GGCATTTCAGGGCTTTTGATCACATGTACTATGTATCAAGGTGCATAACAGAATGAATATGATTATATTTGTTCCTCAGAAAGCAAGAAAAAataacttttaaaatgttttatttaaatatttttattcaATGGCTTGTCTCATTTACATCATTGTAAAGAGCAGCATCTAGTACCAGGACTCGTTGATACGCCTCATGCTCTGGAACCTCATGCCACCCATGCCGCCCATGCCACCCATGCTTCCCATACCCATGCTGAAGTGCCTGTACTCTCCAGGCCTCATGAACATCATCCTGCCTCTGAAGTGGGGCATCTCATACATGAGCCAGTGGCCGTCCTGGATGTTGCAGGACATACAGCTGGACATGCGGTAACGATCCATGATGTTGTCACAGTCCTCCATGATCTCGTGGCTCTGACCGCCGAAGCTCTCTCTCTCGTAGATCTTCATCCTGTAAGATCCCCTGTGCATAGGGATCATGCGGCAGGACCTCATACCGTTGGCCATTCTCATCATGTGGTAGTCAGCGTACTCTCCCTTCCTCATGAAGTACTGGTTTCCCATGTAGTTGGGGCGGTCATACAGCATGAAGCAGCCACCCTCAACCTTGCAGGAGTGGCAGCGGCTCAGGAAGGAGTACATGTCAGGGCAGTCGGTGCTGCACTCATGGGAGCGGCCCATGAAGTTCCTGTCCTCGTAGAAGACTATCCTGCTGTTCATGTTGGGCATTTTGGCTTGCTTCATGGGGgtcctgctgttgctgctgctgctgctgctctggaACTGATATCCTACTGGTTTAAAACCTTTCTTTTTATACCTG

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2055922 True 826 lncRNA 0.49 1 28701932 28702757

Neighbor

gene id symbol gene type direction distance location
LOC110501696 LOC106582163 coding downstream 153367 28538705 ~ 28548565 (-)
LOC110502083 LOC101162407 coding downstream 639249 28058893 ~ 28062683 (-)
LOC110501691 LOC106582059 coding downstream 682816 28009421 ~ 28019116 (-)
LOC110501689 LOC106582060 coding downstream 789013 27903582 ~ 27912919 (-)
acbp acbp coding downstream 863359 27834422 ~ 27838573 (-)
trnan-guu-200 NA coding upstream 17302 28720059 ~ 28720298 (-)
LOC110501699 NA coding upstream 116573 28819330 ~ 28826708 (-)
LOC118943585 NA coding upstream 621388 29324145 ~ 29325269 (-)
LOC110501708 LOC106582177 coding upstream 730795 29433552 ~ 29441071 (-)
dnajc15 dcj15 coding upstream 903306 29606063 ~ 29619908 (-)
G1796451 NA non-coding downstream 35918 28665761 ~ 28666014 (-)
G1796435 NA non-coding downstream 44453 28657258 ~ 28657479 (-)
G1796431 NA non-coding downstream 46390 28655216 ~ 28655542 (-)
G1796418 NA non-coding downstream 56635 28645071 ~ 28645297 (-)
G1796384 LOC105896813 non-coding downstream 89843 28611745 ~ 28612089 (-)
G1796489 NA non-coding upstream 3800 28706557 ~ 28706780 (-)
G1796516 NA non-coding upstream 30951 28733708 ~ 28733948 (-)
G1796546 NA non-coding upstream 52385 28755142 ~ 28755391 (-)
G1796687 NA non-coding upstream 53251 28756008 ~ 28756257 (-)
G1796401 NA other downstream 75041 28626138 ~ 28626891 (-)
G1796239 NA other downstream 263161 28434915 ~ 28451815 (-)
G1796204 NA other downstream 367311 28334224 ~ 28334621 (-)
G1795850 NA other downstream 720553 27980664 ~ 27981379 (-)
G1797146 LOC106582182 other upstream 508907 29211664 ~ 29243649 (-)
G1797556 NA other upstream 956710 29659467 ~ 29660947 (-)
LOC110501714 LOC106582170 other upstream 1135520 29835498 ~ 29846456 (-)
G1797936 NA other upstream 1268801 29971558 ~ 29978535 (-)

Expression


Co-expression Network