G1796615


Basic Information

Item Value
gene id G1796615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28863687 ~ 28864346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2056070
atatgggtaatattgttttaactgtttaggctagagactagaactctggtaatatgggtcatattgttttaactgtttaggctagagactagacctctggtaatatgggtcatattgttttaactgtttaggctagagactagaactctggtaatatgggtcatattgttttaactgtttaggctagagactagacctggtaatatgggtcatattgttttaactgtttaggctagagactagacctggtaatatgggtcatattgttttaactgtttaggctagagactagacctggtattatgggtcatattgttttaactgtttaggctacagactagacctggtaatatgggtcatattgttttaactgtttaggctacagactagacctggtaatatgggtcatattgttttaactgtttaggctagagactagacctggtaatatgggtcatattgttttaactgtttaggctagagactagacctggtaatatgggtcatattgttttaactgtttaggctacagactagacctggtaatatgggtcatattgttttaactgtttaggctacagactagacctggtaatatgggtcatattgttttaactgtttaggctagagactagacctctggtaatatgggtcatattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2056070 True 660 lncRNA 0.36 1 28863687 28864346

Neighbor

gene id symbol gene type direction distance location
LOC110501697 LOC106582162 coding upstream 161023 28701867 ~ 28702664 (+)
LOC110502084 NA coding upstream 467337 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding upstream 573390 28290225 ~ 28290297 (+)
LOC110501694 LOC106582055 coding upstream 787116 28072420 ~ 28076571 (+)
LOC110501693 LOC106582057 coding upstream 811668 28036917 ~ 28052019 (+)
LOC110502085 LOC106582160 coding downstream 115872 28977890 ~ 28984226 (+)
LOC110502121 cld14 coding downstream 128987 28993333 ~ 28994549 (+)
LOC110501700 LOC106582186 coding downstream 133417 28997763 ~ 29010281 (+)
LOC110501701 LOC106586531 coding downstream 199293 29063639 ~ 29094498 (+)
LOC110501702 LOC106582183 coding downstream 237767 29102113 ~ 29167753 (+)
G1796578 NA non-coding upstream 47836 28815596 ~ 28815851 (+)
G1796574 NA non-coding upstream 59560 28803780 ~ 28804127 (+)
G1796573 NA non-coding upstream 61672 28801790 ~ 28802015 (+)
G1796567 NA non-coding upstream 71643 28791604 ~ 28792044 (+)
G1796555 NA non-coding upstream 97978 28760734 ~ 28765709 (+)
G1796616 NA non-coding downstream 667 28865013 ~ 28865248 (+)
G1796619 NA non-coding downstream 7241 28871587 ~ 28871862 (+)
G1796627 NA non-coding downstream 17170 28881516 ~ 28881791 (+)
G1796634 NA non-coding downstream 28866 28893212 ~ 28893800 (+)
G1796636 NA non-coding downstream 32296 28896642 ~ 28896876 (+)
G1795550 NA other upstream 771571 28091565 ~ 28092116 (+)
G1795411 NA other upstream 950812 27898367 ~ 27912875 (+)
G1793717 NA other upstream 2547444 26315826 ~ 26316243 (+)
G1793045 NA other upstream 3131933 25731326 ~ 25731754 (+)
G1797582 NA other downstream 879846 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 1059211 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1636310 30500656 ~ 30545954 (+)

Expression


Co-expression Network