G1796627


Basic Information

Item Value
gene id G1796627
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28881516 ~ 28881791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2056082
catcaaccatgtgtagttaactagtgattatgttaagattgatcgttttaaatttttttataagaagtttaatgctagctagcaacttaccttggctccttgctgcactcgcgtaacaggtggtcagcctgccacgcagtctcctcgtggagtgcaatgtaatcgccatccaaaaatgccgattaccgattgttatggaattggccctaattaattggccatgccgaataatcagtcgacctctagtctgaataTCAATGACTTGTATATAACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2056082 True 276 lncRNA 0.41 1 28881516 28881791

Neighbor

gene id symbol gene type direction distance location
LOC110501697 LOC106582162 coding upstream 178852 28701867 ~ 28702664 (+)
LOC110502084 NA coding upstream 485166 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding upstream 591219 28290225 ~ 28290297 (+)
LOC110501694 LOC106582055 coding upstream 804945 28072420 ~ 28076571 (+)
LOC110501693 LOC106582057 coding upstream 829497 28036917 ~ 28052019 (+)
LOC110502085 LOC106582160 coding downstream 98427 28977890 ~ 28984226 (+)
LOC110502121 cld14 coding downstream 111542 28993333 ~ 28994549 (+)
LOC110501700 LOC106582186 coding downstream 115972 28997763 ~ 29010281 (+)
LOC110501701 LOC106586531 coding downstream 181848 29063639 ~ 29094498 (+)
LOC110501702 LOC106582183 coding downstream 220322 29102113 ~ 29167753 (+)
G1796619 NA non-coding upstream 9654 28871587 ~ 28871862 (+)
G1796616 NA non-coding upstream 16268 28865013 ~ 28865248 (+)
G1796615 NA non-coding upstream 17170 28863687 ~ 28864346 (+)
G1796578 NA non-coding upstream 65665 28815596 ~ 28815851 (+)
G1796574 NA non-coding upstream 77389 28803780 ~ 28804127 (+)
G1796634 NA non-coding downstream 11421 28893212 ~ 28893800 (+)
G1796636 NA non-coding downstream 14851 28896642 ~ 28896876 (+)
G1796642 NA non-coding downstream 50620 28932411 ~ 28941138 (+)
epha6 LOC106582188 non-coding downstream 92723 28755790 ~ 28976739 (+)
G1795550 NA other upstream 789400 28091565 ~ 28092116 (+)
G1795411 NA other upstream 968641 27898367 ~ 27912875 (+)
G1793717 NA other upstream 2565273 26315826 ~ 26316243 (+)
G1793045 NA other upstream 3149762 25731326 ~ 25731754 (+)
G1797582 NA other downstream 862401 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 1041766 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1618865 30500656 ~ 30545954 (+)

Expression


Co-expression Network