G1796839


Basic Information

Item Value
gene id G1796839
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29024618 ~ 29025673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2056350
ttactggaaaacggcccaattctgccctacatgcattagttggtgtatttctctggacttgtagaattttccgacagaattctgcatgtagggcttcaattggatgtttgtcccacattttaaaatccagtttattgagtggcccccaaacctcacttccataaagtgctattggtaggattacactgtcaaatattttagtccaaattctaattgggatgttgattttgaataatttcatttttattgcatacattgctctgcgggctttttctttgagtgccttcactgccatattaaagtttcccgatgcagatatggtcagaccaaggtaggtgtaattttttgtgtgttcaattaaggtgttgttcagggtgaatttacatttgtgtttctgacatctgttttttttttggaaaatcatgattttagttttttggaaatttactgccagggcccaattatggcaatattgctccagaatattaatgttttgttgaagaccttctttggttggtgatagaagtaccaagtcatcagcatatagcaggtatttcacctctgtgtcaaatagtgtgagtcctggcgCTGGAgaatggtccaacatgtctgctaattcattgatataaatgttgaaaagatttggactcaaattgcagccttgtctcacacctcgacattgtgaaaaaaattctgttctttggtttttgatttttattgcacacttattttctgtgtacatacattttattaagtcatacaccttatcaccaagcccactttgtagaattttgtagaatagcccttcgtgccaaatcgaatcaaatgcttttttaaagtcaataaagcaagcaaagattttgccctcttttttttggtggacgtgtttattaattagtgtgtgtaaggtgtatatatggtcagtagtgcgatggttaggaagaaagccaatttgacatttacttattacatttttttcttgaagaaaggtttgaattcttgaattcaaaatgctacagaaaatctttcccaagttactgttgacgcaaattcccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2056350 True 1056 lncRNA 0.36 1 29024618 29025673

Neighbor

gene id symbol gene type direction distance location
LOC110501700 LOC106582186 coding upstream 14337 28997763 ~ 29010281 (+)
LOC110502121 cld14 coding upstream 30069 28993333 ~ 28994549 (+)
LOC110502085 LOC106582160 coding upstream 43417 28977890 ~ 28984226 (+)
epha6 LOC106582188 coding upstream 47879 28755790 ~ 28976739 (+)
LOC110501697 LOC106582162 coding upstream 321954 28701867 ~ 28702664 (+)
LOC110501701 LOC106586531 coding downstream 37966 29063639 ~ 29094498 (+)
LOC110501702 LOC106582183 coding downstream 76440 29102113 ~ 29167753 (+)
LOC110501703 LOC106582182 coding downstream 153198 29178871 ~ 29212842 (+)
LOC118943584 LOC106582182 coding downstream 201998 29227671 ~ 29243652 (+)
tpt1 tpt1 coding downstream 229684 29255357 ~ 29258127 (+)
G1796835 NA non-coding upstream 4022 29020043 ~ 29020596 (+)
G1796685 NA non-coding upstream 24825 28999581 ~ 28999793 (+)
G1796683 NA non-coding upstream 37745 28986572 ~ 28986873 (+)
G1796841 NA non-coding downstream 1402 29027075 ~ 29027468 (+)
G1796862 NA non-coding downstream 17477 29043150 ~ 29043457 (+)
G1796954 NA non-coding downstream 222264 29247937 ~ 29248165 (+)
G1796955 NA non-coding downstream 223826 29249499 ~ 29249774 (+)
G1796971 NA non-coding downstream 249924 29275597 ~ 29275818 (+)
G1795550 NA other upstream 932502 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 986540 28036917 ~ 28052019 (+)
G1795411 NA other upstream 1111743 27898367 ~ 27912875 (+)
G1797582 NA other downstream 718519 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 897884 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1474983 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1862988 30888661 ~ 30891067 (+)
G1798579 NA other downstream 2220808 31246481 ~ 31292205 (+)

Expression


Co-expression Network