G1796971


Basic Information

Item Value
gene id G1796971
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29275597 ~ 29275818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2056502
acatagttgaatgtgctgacaacaaaatcacacaaaaatgatcaatggaaatcaaatttatcaacccatggaggtctggatttggagtcacactcaaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgttcttaaaacaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctccctacaatgcct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2056502 True 222 lncRNA 0.40 1 29275597 29275818

Neighbor

gene id symbol gene type direction distance location
LOC110501705 NA coding upstream 11179 29260930 ~ 29264418 (+)
tpt1 tpt1 coding upstream 17470 29255357 ~ 29258127 (+)
LOC118943584 LOC106582182 coding upstream 31945 29227671 ~ 29243652 (+)
LOC110501703 LOC106582182 coding upstream 62755 29178871 ~ 29212842 (+)
LOC110501702 LOC106582183 coding upstream 107844 29102113 ~ 29167753 (+)
LOC110501706 LOC106582180 coding downstream 15119 29290937 ~ 29292575 (+)
tsc22d1 LOC107713726 coding downstream 64969 29340787 ~ 29427406 (+)
LOC110501709 LOC106582175 coding downstream 224332 29500150 ~ 29589083 (+)
LOC118943646 NA coding downstream 345294 29621005 ~ 29622074 (+)
LOC110501715 LOC106582169 coding downstream 582937 29858755 ~ 29872101 (+)
G1796955 NA non-coding upstream 25823 29249499 ~ 29249774 (+)
G1796954 NA non-coding upstream 27432 29247937 ~ 29248165 (+)
G1796862 NA non-coding upstream 232140 29043150 ~ 29043457 (+)
G1796841 NA non-coding upstream 248129 29027075 ~ 29027468 (+)
G1796839 NA non-coding upstream 249924 29024618 ~ 29025673 (+)
G1796977 NA non-coding downstream 19886 29295704 ~ 29295929 (+)
G1796994 NA non-coding downstream 39773 29315591 ~ 29315838 (+)
G1796996 NA non-coding downstream 43192 29319010 ~ 29319230 (+)
G1796998 NA non-coding downstream 46463 29322281 ~ 29322495 (+)
G1797008 NA non-coding downstream 59127 29334945 ~ 29335160 (+)
LOC110501700 LOC106582186 other upstream 265324 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 291371 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1183481 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1237519 28036917 ~ 28052019 (+)
G1795411 NA other upstream 1362722 27898367 ~ 27912875 (+)
G1797582 NA other downstream 468374 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 647739 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1224838 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1612843 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1970663 31246481 ~ 31292205 (+)

Expression


Co-expression Network