G1797456


Basic Information

Item Value
gene id G1797456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29577660 ~ 29585719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057016
GGAAGCAGACagggtggctggctggcagggagatagagagctctgcctctcctctccttcatgttGGCTTTCTGTGGGCCGCGTTAAAAGAGATAAATGTGCTTCTGCCTACTCCTCtttgctctcctctgctcccctttcgtctgctcccctcttctctccccttctctgctctgctccaacCGGCTCCTGGCTCTGTTTTACACCAAGCTGTTTTTACCTCCCTGCACCACCAAAAGGAGCTCTGCTTTCCAGCTGCTAATCTGAGAATTGGCACAGAACTATTTTGTGCTTGTGCCTACAGGAGATTCAGACAGTGAACAGAAACAAAAGGAAAGCAGGCTAATAAAATGACTCCAGTCAGAATCAGAATAGAAGCTGCTTCCTTTTTGTGATGAAACTAAATTTCTGGGAGCTGAAatggaggggaggtagagggggaggagaaagggggaggaaagaaggagagatgtagagggggaggatagagggagacagagagaagagccaCGGGAGAATTAGGCAATTTGTGTTctacagtcagtctctcctctcgcCTGAAACCGGTTTGTCTTTTCTTCTGTTCTGGCTGACGGCATCCTCGTCTATCTCAGTGTCCCCGGCGCCCTGCGATggagtgtgtttctgtgtgtgaacaCAACCATAGCACTGCCGCGTGCAGCTGGGAGAgatcatgtgtgtgtttgtgtgtgtgcctgcatacgTGCGTTTTGCATGTGCCTACATTCAGAGTTGAAGTGTGTGTGGCCAGGGCCAGCAGCTACTGCTTGGCAACCAGACCCATAGTACCTTTCACCTGAACCCCCCTCCACCCAGTCCTAGGGTTCTTCATCCAAGAACACAACAGACCTACCTAGTCTCAGAGCAAAACATATGATATTTTACAAAATCCATGCCACTACAAGACCAAAAGTATGCTGATCGAACATTTAATTCCAAAATTATGGTCATTAATATTGAGTTGGCCCCCCCTTTCCAGCTATAATggcatccactcttctggggaggctttccactagatgttggaacattgctgcagggacttgcttccattcagccacaagagcattagtgaggtcgggcacctatgttgggcaattaggcctgactcacagtctgcgttccaattcatccctaaAGTGACTGGCTCtgcgcaggccagtcaagttcttccacaccgatctcgacaaaccatttctgtatggacctcactttgtgcacggggctttgtcatgctgaaacaggaaagggccttcctcaaactgccacaaagttggaagcacagaatcatctagaatgtcattgtatgctatagcgttaagatttcccttaacTGGAAGTAAGGgtcctagcccaaaccatgagaaacagccccagaccattattattcctccaccaaaatttacagttggcactatatattggggcaggtagcattctccttgcatccgccaaatccagattcatccgtcggagtGCTAGATGGTGAAgggtccaatggcagcgagcctCACATCATTCTGGCCGACGCTTGGTAAATTTGGGCTTGTGTGCGGATGCTCGGctatggaaacctatttcatgaagctcctgacgaacagttcttgtgctgattttGCTTCCAGAGGatgtttggaactcggtagtgagtgttgcaactgaggacagattacTTTTACGTGCTATGCCCTTCAGCgtttccgttctgtgagcttgtgtggcctaccacttcgcggctgagccgttgttgctcctagatgtttctacttcacaataccATTACTTATAGCTGGCCGGGGCAGCTCTAGGAGGGCAGAaacttgacaaactgacttgttggaatgtgacggtgccacattgaaagttacTGACCTCCTCAGtaatgccattctactgccaatgtttgtctatggagattgactTTGTGCTCGaattcactcatttgaagggttgtccacatacttttgttagGTTAGgagtaaaggttagggttaaggttagggttaggagttaagttaaagggttaaggttaggggaagggttagctaacatgctaaatagttgcaaagtagctaaaaagtagtaagcaGTTCTAATTTGCTAAAATGCTGAAGTTGTCCAGAATGAGATTTGAACGTGCACCATTTGGATAGCTAGACGTTCACATTATACATCCGACCAATGACCCTCCATTTGTTTTTGCCTTAATTAACCTTTTTTTTTACtagcaagtcaggtaagaactaATCATTATATACAATGATGGcctgcactgccctatgggactcccaatcacggctggttgtgaaacagcctggatttgaaccagggggtctgtagtgacgcctctagcattgagatgcagtgcctaagactgctgtgccacccgggaggcccctgagTGTCATACCCCCGAGTGTCATACCAAATATAACATTGTCATACCTATTTGAGTGACTCGGATTCACGTAGGCCAATTTAATGTAACCTAACGTAAAGTAACatttcatactaaatggagtggcaCGGATTTGAGTAAAATATTATATgttttgctctgagaccaggctggataGACAGGCTTTCAAGACTGTTTCACCCCATTAACAATTGGCTCCCCTCCAACATGTCGAACACCAACCATTAAAACACTCCCAGTCAGATGAATATTACAGGCGAAAATGTAACAATCCAGATAATATTATGAATATGCTTTGTAGTATACATCAAATGTATATGTACTGTACCCAGTAGCAGagcctctctctctgatgtgAGGGGTCCTCTCATGGCTGCTTCACTCCTCCTGTCTCTGCTGGGGTACAGAGTGGTGGCATAGCCGTTCACtacctacagacacacaaacaacacagtgtTAGTCCTTATAGACACACAAACGCAATGTGAGCTGATGTGTGTGCACTCATCGGGGTAGTGTTCTTTTTATGAGAGAGTGGCTGATGCTACTGATGCTACTCCATTGGGATACCACCCtttccttcccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057016 True 3026 lncRNA 0.47 2 29577660 29585719

Neighbor

gene id symbol gene type direction distance location
LOC110501708 LOC106582177 coding downstream 136589 29433552 ~ 29441071 (-)
LOC118943585 NA coding downstream 252391 29324145 ~ 29325269 (-)
LOC110501699 NA coding downstream 750952 28819330 ~ 28826708 (-)
trnan-guu-200 NA coding downstream 857528 28720059 ~ 28720298 (-)
LOC110501696 LOC106582163 coding downstream 1029095 28538705 ~ 28548565 (-)
dnajc15 dcj15 coding upstream 20344 29606063 ~ 29619908 (-)
tnfsf11 LOC106582173 coding upstream 121093 29706812 ~ 29727741 (-)
LOC110501713 LOC106582171 coding upstream 159650 29745369 ~ 29770850 (-)
LOC110501714 LOC106582170 coding upstream 249779 29835498 ~ 29846456 (-)
pou1f1 pou1f1 coding upstream 287541 29873260 ~ 29876558 (-)
G1797454 LOC106582175 non-coding downstream 3090 29572282 ~ 29574570 (-)
G1797440 NA non-coding downstream 27573 29549495 ~ 29550087 (-)
G1797357 NA non-coding downstream 79224 29498175 ~ 29498436 (-)
G1797355 NA non-coding downstream 79931 29497528 ~ 29497729 (-)
G1797350 NA non-coding downstream 82488 29494808 ~ 29495172 (-)
G1797467 NA non-coding upstream 6510 29592229 ~ 29592456 (-)
G1797529 NA non-coding upstream 54847 29640566 ~ 29640839 (-)
G1797560 NA non-coding upstream 79174 29664893 ~ 29665338 (-)
G1797778 NA non-coding upstream 102272 29687991 ~ 29688259 (-)
G1797779 NA non-coding upstream 102877 29688596 ~ 29688799 (-)
G1797146 LOC106582182 other downstream 334011 29211664 ~ 29243649 (-)
G1796401 NA other downstream 950769 28626138 ~ 28626891 (-)
G1796239 NA other downstream 1138889 28434915 ~ 28451815 (-)
G1796204 NA other downstream 1243039 28334224 ~ 28334621 (-)
G1797556 NA other upstream 73748 29659467 ~ 29660947 (-)
G1797936 NA other upstream 385839 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 485356 30071075 ~ 30071764 (-)
G1798781 NA other upstream 574515 30160234 ~ 30160686 (-)

Expression


Co-expression Network