G1797781


Basic Information

Item Value
gene id G1797781
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29743316 ~ 29744917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057373
ggtcgcaaagttcaaggggccgaatactttcgcaaggcactgtatgtcacagTACAATAACACACAGtatccatattttttttcagAGGAAGATTGTAATATGTTTATTTGTTGAGTTGTGATTGTAAACATATAGACAGCTGGTCGCTGTCGGGCCCTCCTGTATCTATCAATGTATTTAGTGTAACTGTACATTCCAATGCGCTCCTTCACAGGCCGCCTGGCTGCCTGCCGCTATAATGTGTTATTTAAAGCTGAATGTGCGTCCGCAGAGAGAACTCCATAGTATGAGATGTACTATCAGATAAGTCTATTTTGTTACTGTCGTTGTTGCAGTTCTACTAGCGTCTTGTCCTGCACCGTGGAAGGCAAACTGTGTTTACTGGATCCTGTATTTTTCCTACTTCTTTGTATAATTTTGCCAAATAAGATATTTCATGATTGAAGTTGTAACAGTGAGTACACTACTATTTGTCCCCTTCTAGTGACATCGCTAAATATTTCACACATTCTAAGCTTGACGGCAAAGCACTGTATTTGTCATTGTTTAAGCTGTGTATCAATAAAGCTTTTTCATGTGATTCTGCCTAAC
>TU2057375
tcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgcaaaaagttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaataaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacaactgattgttgtcctatggacagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttcggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcactcccaccttttcagtttttgattggttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattctttaaaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaggggccgaatactttcgcaaggcactgtatgtcacagTACAATAACACACAGtatccatattttttttcagAGGAAGATTGTAATATGTTTATTTGTTGAGTTGTGATTGTAAACATATAGACAGCTGGTCGCTGTCGGGCCCTCCTGTATCTATCAATGTATTTAGTGTAACTGTACATTCCAATGCGCTCCTTCACAGGCCGCCTGGCTGCCTGCCGCTATAATGTGTTATTTAAAGCTGAATGTGCGTCCGCAGAGAGAACTCCATAGTATGAGATGTACTATCAGATAAGTCTATTTTGTTACTGTCGTTGTTGCAGTTCTACTAGCGTCTTGTCCTGCACCGTGGAAGGCAAACTGTGTTTACTGGATCCTGTATTTTTCCTACTTCTTTGTATAATTTTGCCAAATAAGATATTTCATGATTGAAGTTGTAACAGTGAGTACACTACTATTTGTCCCCTTCTAGTGACATCGCTAAATATTTCACACATTCTAAGCTTGACGGCAAAGCACTGTATTTGTCATTGTTTAAGCTGTGTATCAATAAAGCTTTTTCATGTGATTCTGCCTAAC

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057373 False 592 lncRNA 0.40 1 29743316 29743907
TU2057375 True 1602 lncRNA 0.41 1 29743316 29744917

Neighbor

gene id symbol gene type direction distance location
tnfsf11 LOC106582173 coding downstream 15575 29706812 ~ 29727741 (-)
dnajc15 dcj15 coding downstream 123408 29606063 ~ 29619908 (-)
LOC110501708 LOC106582177 coding downstream 302245 29433552 ~ 29441071 (-)
LOC118943585 NA coding downstream 418047 29324145 ~ 29325269 (-)
LOC110501699 NA coding downstream 916608 28819330 ~ 28826708 (-)
LOC110501713 LOC106582171 coding upstream 452 29745369 ~ 29770850 (-)
LOC110501714 LOC106582170 coding upstream 90581 29835498 ~ 29846456 (-)
pou1f1 pou1f1 coding upstream 128343 29873260 ~ 29876558 (-)
LOC110501718 LOC106582166 coding upstream 195222 29940139 ~ 29995646 (-)
mxra5b LOC106582197 coding upstream 548193 30293110 ~ 30322552 (-)
G1797808 NA non-coding downstream 1211 29741860 ~ 29742105 (-)
G1797804 NA non-coding downstream 6389 29736669 ~ 29736927 (-)
G1797779 NA non-coding downstream 54517 29688596 ~ 29688799 (-)
G1797778 NA non-coding downstream 55057 29687991 ~ 29688259 (-)
G1797560 NA non-coding downstream 77978 29664893 ~ 29665338 (-)
G1797863 LOC107688654 non-coding upstream 113801 29858718 ~ 29867193 (-)
G1797869 NA non-coding upstream 125784 29870701 ~ 29872087 (-)
G1797935 NA non-coding upstream 225054 29969971 ~ 29977559 (-)
G1797556 NA other downstream 82369 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 499667 29211664 ~ 29243649 (-)
G1796401 NA other downstream 1116425 28626138 ~ 28626891 (-)
G1796239 NA other downstream 1304545 28434915 ~ 28451815 (-)
G1797936 NA other upstream 226641 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 326158 30071075 ~ 30071764 (-)
G1798781 NA other upstream 415317 30160234 ~ 30160686 (-)
G1798869 NA other upstream 742072 30486989 ~ 30519672 (-)

Expression


Co-expression Network