G1797869


Basic Information

Item Value
gene id G1797869
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29870701 ~ 29872087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057474
TATTTTATTCATTATAAAAGTCAAAGTCTAAACAGTACAACTGTATAGATACAGAGGATACATACAGggtggagaaaaagtgtgacaacAACATTTCATTTATTCACCTTCAGGAAGACAATGATCAGTCTTCTTCACAAACCCATTATACActctagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgttttaaAAAAACAGCTCTAACAACAGATACGATAACTGCACAGCAGCCAAGataaaaggagagagatgaggaggacagacagactgttGGTTCTATCCCACATCAGAaagacaggacacacagagatCAACTAAGACACATAGACAACATCTTCAAATTAGAGTACAACTCAATAGTACAAAACAAGCAATTCAAAATGAACTATTCTTCGAAATATGTTAATGATTATTAGTTTGAATTTGCATTAATTACTCTTTCACACATCGTTTTAAACTGAATCTATTTACGTATCTTGACATGCAGCTTGATCCTGCTAATTCCATAGATTCTCATGCAAAATGTTCATTAGTGAAAAAGTCAAGCCCTTACCCTACTCGGAGGGGTTAATGTCAGTAGTTCCTAGAGTTAATGTCAGTGGTTCTAGACAGACACAGTGTCAGTAGTTTGACACCAGCAGCGTCTATAGTACTGTACCTAAAGATGTGAGAGCACAGAGAACAGTCATTACCTCACTCTGTTTCTTTGACTTCATCCTCCTCCCACAGGATTTGTACTCCCAGGACTAATGGAGAAGCCATGCACAAAATATCATGTGAACATAGAGGTCACTTTTCCAGAGTCAACTGTCTGTATGTACATAAAGAGGCCAACCCCTTCAGCAGGCTGCAGCAGAATGTAGTGTGGGTCATAATATTCTATTATTCCTTAATTTAGTCATTACATATTCAGAATCACCCACAATCTGGACCACCAGAATCACCCACACATGGACCACCAGCCTGCTGGTACACAGGCCTAgcccatggtgtgtgtgttagtccaCTCCCAGGGCTCGGAGTTGTCGCTCTATCTCGTCGTCAGAGATCTGCGTTTTCCGTTTAGGAGAAGCAGTAGGGAGACTCTTCCCTGCTGCTGGGGCTCTC
>TU2057475
TATTTTATTCATTATAAAAGTCAAAGTCTAAACAGTACAACTGTATAGATACAGAGGATACATACAGggtggagaaaaagtgtgacaacAACATTTCATTTATTCACCTTTCCTCTCTGGAGAATTGCACCACAAAATCAAGTTGAAAAGAAACTGATGTAACAATAGTAAGCCAGTCAATGTTTTCCAGTAACAATCTTTAAGACAATTATTTTAGTATACAGTGATATACTAGTCGACATTAGAAAACCAGAAGAGAACCGTGAGAGGGAACATTCTAGAATGCATGAAATGTTTAGTTGATAATGCACAATATGTCATTGTCTCCTTTCCTGCTCTTACAGCATGgtagagtgaaacagagagagcgtCAGGAAGACAATGATCAGTCTTCTTCACAAACCCATTATACActctagaatgtgtgtgtgtgtgtgtgtggtgttttaaAAAAACAGCTCTAACAACAGATACGATAACTGCACAGCAGCCAAGataaaaggagagagatgaggaggacagacagactgttGGTTCTATCCCACATCAGAaagacaggacacacagagatCAACTAAGACACATAGACAACATCTTCAAATTAGAGTACAACTCAATAGTACAAAACAAGCAATTCAAAATGAACTATTCTTCGAAATATGTTAATGATTATTAGTTTGAATTTGCATTAATTACTCTTTCACACATCGTTTTAAACTGAATCTATTTACGTATCTTGACATGCAGCTTGATCCTGCTAATTCCATAGATTCTCATGCAAAATGTTCATTAGTGAAAAAGTCAAGCCCTTACCCTACTCGGAGGGGTTAATGTCAGTAGTTCCTAGAGTTAATGTCAGTGGTTCTAGACAGACACAGTGTCAGTAGTTTGACACCAGCAGCGTCTATAGTACTGTACCTAAAGATGTGAGAGCACAGAGAACAGTCATTACCTCACTCTGTTTCTTTGACTTCATCCTCCTCCCACAGGATTTGTACTCCCAGGACTAATGGAGAAGCCATGCACAAAATATCATGTGAACATAGAGGTCACTTTTCCAGAGTCAACTGTCTGTATGTACATAAAGAGGCCAACCCCTTCAGCAGGCTGCAGCAGAATGTAGTGTGGGTCATAATATTCTATTATTCCTTAATTTAGTCATTACATATTCAGAATCACCCACAATCTGGACCACCAGAATCACCCACACATGGACCACCAGCCTGCTGGTACACAGGCCTAgcccatggtgtgtgtgttagtccaCTCCCAGGGCTCGGAGTTGTCGCTCTATCTCGTCGTCAGAGATCTGCGTTTTCCGTTTAGGAGAAGCAGTAGGGAGACTCTTCCCTGCTGCTGGGGCTCTC
>TU2057477
TATTTTATTCATTATAAAAGTCAAAGTCTAAACAGTACAACTGTATAGATACAGAGGATACATACAGggtggagaaaaagtgtgacaacAACATTTCATTTATTCACCTTTCCTCTCTGGAGAATTGCACCACAAAATCAAGTTGAAAAGAAACTGATGTAACAATAGTAAGCCAGTCAATGTTTTCCAGTAACAATCTTTAAGACAATTATTTTAGTATACAGTGATATACTAGTCGACATTAGAAAACCAGAAGAGAACCGTGAGAGGGAACATTCTAGAATGCATGAAATGTTTAGTTGATAATGCACAATATGTCATTGTCTCCTTTCCTGCTCTTACAGCATGgtagagtgaaacagagagagcgtCAGGAAGACAATGATCAGTCTTCTTCACAAACCCATTATACActctagaatgtgtgtgtgtgtgtgtggtgttttaaAAAAACAGCTCTAACAACAGATACGATAACTGCACAGCAGCCAAGataaaaggagagagatgaggaggacagacagactgttGGTTCTATCCCACATCAGAaagacaggacacacagagatCAACTAAGACACATAGACAACATCTTCAAATTAGAGTACAACTCAATAGTACAAAACAAGCAATTCAAAATGAACTATTCTTCGAAATATGTTAATGATTATTAGTTTGAATTTGCATTAATTACTCTTTCACACATCGTTTTAAACTGAATCTATTTACGTATCTTGACATGCAGCTTGATCCTGCTAATTCCATAGATTCTCATGCAAAATGTTCATTAGTGAAAAAGTCAAGCCCTTACCCTACTCGGAGGGGTTAATGTCAGTAGTTCCTAGAGTTAATGTCAGTGGTTCTAGACAGACACAGTGTCAGTAGTTTGACACCAGCAGCGTCTATAGTACTGTACCTAAAGATGTGAGAGCACAGAGAACAGTCATTACCTCACTCTGTTTCTTTGACTTCATCCTCCTCCCACAGGATTTGTACTCCCAGGACTAATGGAGAAGCCATGCACAAAATATCATGTGAACATAGAGGTCACTTTTCCAGAGTCAACTGTCTGTATGTACATAAAGAGGCCAACCCCTTCAGCAGGCTGCAGCAGAATGTAGTGTGGGTCATAATATTCTATTATTCCTTAATTTAGTCATTACATATTCAGAATCACCCACAATCTGGACCACCAGAATCACCCACACATGGACCACCAGCCTGCTGGTACACAGGCCTAgcccatggtgtgtgtgttagtccaCTCCCAGGGCTCGGAGTTGTCGCTCTATCTCGTCGTCAGAGATCTGCGTTTTCCGTTTAGGAGAAGCAGTAGGGAGACTCTTCCCTGCTGCTGGGGCTCTC

Function

NR:

description
charged multivesicular body protein 2b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057474 False 1126 lncRNA 0.41 2 29870701 29872087
TU2057475 False 1367 lncRNA 0.40 2 29870701 29872087
TU2057477 True 1365 lncRNA 0.40 2 29870701 29872087

Neighbor

gene id symbol gene type direction distance location
LOC110501714 LOC106582170 coding downstream 24245 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 99851 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 142960 29706812 ~ 29727741 (-)
dnajc15 dcj15 coding downstream 250793 29606063 ~ 29619908 (-)
LOC110501708 LOC106582177 coding downstream 429630 29433552 ~ 29441071 (-)
pou1f1 pou1f1 coding upstream 1173 29873260 ~ 29876558 (-)
LOC110501718 LOC106582166 coding upstream 68052 29940139 ~ 29995646 (-)
mxra5b LOC106582197 coding upstream 421023 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 492518 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 527088 30399175 ~ 30402935 (-)
G1797863 LOC107688654 non-coding downstream 3508 29858718 ~ 29867193 (-)
G1797781 NA non-coding downstream 125784 29743316 ~ 29744917 (-)
G1797808 NA non-coding downstream 128596 29741860 ~ 29742105 (-)
G1797935 NA non-coding upstream 97884 29969971 ~ 29977559 (-)
G1797958 NA non-coding upstream 127628 29999715 ~ 29999982 (-)
G1797961 NA non-coding upstream 129183 30001270 ~ 30001578 (-)
G1797962 NA non-coding upstream 130926 30003013 ~ 30003216 (-)
G1798731 NA non-coding upstream 195342 30067429 ~ 30067655 (-)
G1797556 NA other downstream 209754 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 627052 29211664 ~ 29243649 (-)
LOC110501699 NA other downstream 1044056 28819330 ~ 28826708 (-)
G1796401 NA other downstream 1243810 28626138 ~ 28626891 (-)
G1797936 NA other upstream 99471 29971558 ~ 29978535 (-)
G1798732 LOC106582226 other upstream 198988 30071075 ~ 30071764 (-)
G1798781 NA other upstream 288147 30160234 ~ 30160686 (-)
G1798869 NA other upstream 614902 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 1089000 30960714 ~ 30963603 (-)

Expression


Co-expression Network