G1797935


Basic Information

Item Value
gene id G1797935
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29969971 ~ 29977559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057551
GGGTAAAGTTAATTATTTAATAACGAGGACAGCAATCACCTTTGCGAGGCTCACTGCTTTGCAGTAAAAACTTTAAAACGGTCAAAACCATTTGATTTTGAGATGGGGATGAAATCTAAAGTTCTATATATTCATTGGCTATGTCATAGCTAATTTGTAAATGGTAATGAGAAGTTAATTAGTGGGGGAGGGTGATTTCAGAACCAAACTgtgatctgatagtggtagtggggtggtagatttctagtctcccttatggctcagcTCAGGTGCCGAAAAAGTTCATACACCATAGacagacatcatttacacacgcacacacacacacacacgcacacacacaaacgtatcgTTCATGTACATATCCAATCGTCTTGAAAGGAAAAGATGCACATCCCTATTGAATAAAGTACAGTACGTACGTAcgttacagtacagtagagtacagtacagtaaagaaaagtacagtagagtatagtttacTGCAGtcctatactgtacagtagagtggaatggagtagagttcagtacagaacacagtagagcacactagagttgagtacactataatgaactgtattgtactgtactgaactatactgtactcatTAAAGAGCTCATAAAAAAGAATAGcctgtgtgtagaataatacccaaatatgcaaaggaggatattgcatatttctacctctgtgtacctattcaggatacatcaccatgaagagaatgaccaTCATATCCATTATGATGCATTTCTGGGTAGTAccgatcagggacccatgatgaagTTCTGTTTCTGCAATTCTGTCaccgggtgtaaatccacttcacttactgttcAATGACCAAAATAGATTTTGACAAAgtcaaggtgtcatgtcatagctgacaccccattctttcttcAGACATGTTGAGTCTTCATTCAGAGCAGATATTTAACAGAGTTTTTGGAAAACATGGACACAAAAGAAACGGATGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057551 True 983 lncRNA 0.39 2 29969971 29977559

Neighbor

gene id symbol gene type direction distance location
pou1f1 pou1f1 coding downstream 93413 29873260 ~ 29876558 (-)
LOC110501714 LOC106582170 coding downstream 123515 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 199121 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 242230 29706812 ~ 29727741 (-)
dnajc15 dcj15 coding downstream 350063 29606063 ~ 29619908 (-)
mxra5b LOC106582197 coding upstream 315551 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 387046 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 421616 30399175 ~ 30402935 (-)
si:dkey-67c22.2 LOC106582233 coding upstream 425643 30403202 ~ 30414069 (-)
LOC110502089 LOC106582237 coding upstream 479275 30456834 ~ 30459539 (-)
G1797869 NA non-coding downstream 97884 29870701 ~ 29872087 (-)
G1797863 LOC107688654 non-coding downstream 102778 29858718 ~ 29867193 (-)
G1797781 NA non-coding downstream 225054 29743316 ~ 29744917 (-)
G1797958 NA non-coding upstream 22156 29999715 ~ 29999982 (-)
G1797961 NA non-coding upstream 23711 30001270 ~ 30001578 (-)
G1797962 NA non-coding upstream 25454 30003013 ~ 30003216 (-)
G1798731 NA non-coding upstream 89870 30067429 ~ 30067655 (-)
G1798769 NA non-coding upstream 156179 30133738 ~ 30137205 (-)
G1797556 NA other downstream 309024 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 726322 29211664 ~ 29243649 (-)
LOC110501699 NA other downstream 1143326 28819330 ~ 28826708 (-)
G1796401 NA other downstream 1343080 28626138 ~ 28626891 (-)
G1798732 LOC106582226 other upstream 93516 30071075 ~ 30071764 (-)
G1798781 NA other upstream 182675 30160234 ~ 30160686 (-)
G1798869 NA other upstream 509430 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 983528 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 999335 30976894 ~ 30995302 (-)

Expression


Co-expression Network