G1798732 (LOC106582226)


Basic Information

Item Value
gene id G1798732
gene name LOC106582226
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30071075 ~ 30071764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058411
CTGTACTGTAACTTACATGTTGAGTGGTAGTTGGACCTTGGCTTGAGCCAGCAGTTCTGAGGTGACTGAAGCCATTCTGGGAGGAACCAGAACTCCGACTGAGGAGGGAGTGGGACCGGGGGGACCGGGGGGAGAGTCCTGTATTCGTGCAGCAGCCCTGGGGTCAGAGGAGCTGATGAGGACAGGGTGGGAGATCTCCATGCTGTGTCTGTTGTTGAGCTGGGCTGTCCGCTGCGTCACACTCAGAGCTGTGAACGAGTGGCGCTTCTTAGCGtttttcttcccctctccccctcttctctcctcctcttgcctctGGAGGGCACCATTGCCACTTCCTGCAGAGGATGGGTCAGGGGAGGGGCCAAGGGAGCAGGGACCCAATGGGAGGCCGGGAGACGGATCAAAGCTGGGGCCAGGGACGGGATTGGATGTCGGCTTGTCAATCTCCATCAACTGTTTGGCTGTTTCATTTAGCTAaagtggagaggagatgagaggaaaggagacgagaggataggagacgagaggagacgaaaggagacgagaggagaggaaaggatgaGATCCAAATCATTGAATTGAATTGCTTTAGACTGctttactacacactgctggcTCTCAGAGCACGCCTTCTGCTGTTGGCAGAACTTCAAACCAGACAAAAAAgatcacacacaccccacaccc

Function

NR:

description
SH3 domain-containing RING finger protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058411 True 690 TUCP 0.55 1 30071075 30071764

Neighbor

gene id symbol gene type direction distance location
LOC110501718 LOC106582166 coding downstream 75429 29940139 ~ 29995646 (-)
pou1f1 pou1f1 coding downstream 194517 29873260 ~ 29876558 (-)
LOC110501714 LOC106582170 coding downstream 224619 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 300225 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 343334 29706812 ~ 29727741 (-)
mxra5b LOC106582197 coding upstream 221346 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 292841 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 327411 30399175 ~ 30402935 (-)
si:dkey-67c22.2 LOC106582233 coding upstream 331438 30403202 ~ 30414069 (-)
LOC110502089 LOC106582237 coding upstream 385070 30456834 ~ 30459539 (-)
G1798731 NA non-coding downstream 3420 30067429 ~ 30067655 (-)
G1797962 NA non-coding downstream 67859 30003013 ~ 30003216 (-)
G1797961 NA non-coding downstream 69497 30001270 ~ 30001578 (-)
G1797958 NA non-coding downstream 71093 29999715 ~ 29999982 (-)
G1797935 NA non-coding downstream 93516 29969971 ~ 29977559 (-)
G1798769 NA non-coding upstream 61974 30133738 ~ 30137205 (-)
G1798771 NA non-coding upstream 68951 30140715 ~ 30140938 (-)
G1798775 NA non-coding upstream 75218 30146982 ~ 30147193 (-)
G1798717 NA non-coding upstream 76106 30147870 ~ 30149445 (-)
G1798780 NA non-coding upstream 87541 30159305 ~ 30159593 (-)
G1797936 NA other downstream 92540 29971558 ~ 29978535 (-)
G1797556 NA other downstream 410128 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 827426 29211664 ~ 29243649 (-)
LOC110501699 NA other downstream 1244430 28819330 ~ 28826708 (-)
G1798781 NA other upstream 88470 30160234 ~ 30160686 (-)
G1798869 NA other upstream 415225 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 889323 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 905130 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 967429 31037006 ~ 31042302 (-)

Expression


Co-expression Network