G1798717


Basic Information

Item Value
gene id G1798717
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30147870 ~ 30149445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058396
AAACAAGTAAAAGTTATACATGTATATGGGTATAACTGACGGTGGCTACcaatagtggctaatatttaacatgaaaCAAATCGTAAAAAAATACAGTGAAAAGTCTGAGCATATAATTCAAACTCTAGACATCATAAATCAACTTGGTAGGTTTGGCGCTATACGTTCATAGAGGCCTATAGTTTGGGTCTCCAAATGTCATCCTTGTAAGTTATAAGGACAGCATTTCATAAACTGCACCGTGGAAAAggtgatatgttgatatgcttcagtttgctgccatactgtagtactggtttcacatttgttttCAGCAATCATAAGGTAAAATAGATCTAAAACAATTGTCATTTATATTTACTCATTTAcctcacttttttttaaatacagtgcatggagaatggcgTTATTTAGATTGGAAAAAATAAAGTTGTTTCTTGACCTTAATCGTGGTTTCATCACtcgtaaaggtggtggaattatgagggaattaagtcaagCATACagcgtatctgtagacacacctccaccccACTTTCCTTTCTTTGATCTCCACCCCAAAGGAATAGTGGGTGAATAGCATGATATTtcatgcttaaattcaaggtcagaataatGTGAAGAGAAAAGTGCATAACAAGAGAATAAGGTTCCATTTACGCGCATTTAGCTCGGTCGGAATCCCCCTACTGAACACAAGGTTCATGTCTTCCAgagaggtgtgtgagtgtgtagctGTCACACTGCATGCACTTTGGGTTGATTATTCTGGGTAGGGTCAGGTTAGTATGGACTAAACCAAGGTTATCTGCTGTATAGGGTCCACATACCTCATTGGGACAACAGAGTACTttgcaatagggtgccattttgtacaCAGCCCATATAATACACCCTTAGGGTTTGTATTAAATGGTTCTGTCCCAGTCGGATGGGAAAACACACAGGGCTCCACTCAATCAAACACAGTAGTCCTACAGTCCATGGTCAAATGAATCACAGAATGGTTCTGGTTTCTGAAAACACAACTTCCCAGCTGTGAGAATCCCATCATAGGTACATGTAGATGATTCCAGATGTCAAAATAAGAAGTGTGTGTTTGCAGAAGTTTGTATGAACATCACCATGATGTGTTTGATTGAATTCCAGACTGTTGACATACAGAGGGGGCTACAGGAGAATAGACAAGATATTGATCATGTTGATTTAAAATgtgcaaaatatattttggttgaAAACGTATCTCTTGCTTTGCTGTGCCTGAACTCCCTCAAATGTAGAATTCGACAGAATTTCCATGTAATTTAGCTGTAGTAAAACTGAACTGTCTTGTCTTGTTATTGTCATATTTCTGTAAAAGCCTTTGATAAACAGTGGTCTGCTGTTTGAGAAGTATGAAGACCTTATACCTGCAGGAGAAAGACTTCTGTTCACTATGAAGACTGTGTCATATGGAGATTATGGTTAGTGTGAATATGGAGGTCAGTGTTTGTCAATATGAAGAGTAtttttatgtggttgtgatgttctCCTCCTTTTCTACCACCCAAAACCTCAATAAACATTTCATTGTGCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058396 True 1576 lncRNA 0.38 1 30147870 30149445

Neighbor

gene id symbol gene type direction distance location
LOC110501718 LOC106582166 coding downstream 152224 29940139 ~ 29995646 (-)
pou1f1 pou1f1 coding downstream 271312 29873260 ~ 29876558 (-)
LOC110501714 LOC106582170 coding downstream 301414 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 377020 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 420129 29706812 ~ 29727741 (-)
mxra5b LOC106582197 coding upstream 143665 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 215160 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 249730 30399175 ~ 30402935 (-)
si:dkey-67c22.2 LOC106582233 coding upstream 253757 30403202 ~ 30414069 (-)
LOC110502089 LOC106582237 coding upstream 307389 30456834 ~ 30459539 (-)
G1798775 NA non-coding downstream 677 30146982 ~ 30147193 (-)
G1798771 NA non-coding downstream 6932 30140715 ~ 30140938 (-)
G1798769 NA non-coding downstream 10665 30133738 ~ 30137205 (-)
G1798731 NA non-coding downstream 80215 30067429 ~ 30067655 (-)
G1797962 NA non-coding downstream 144654 30003013 ~ 30003216 (-)
G1798780 NA non-coding upstream 9860 30159305 ~ 30159593 (-)
G1798782 NA non-coding upstream 11540 30160985 ~ 30161204 (-)
G1798787 NA non-coding upstream 17795 30167240 ~ 30167452 (-)
G1798789 NA non-coding upstream 20468 30169913 ~ 30170121 (-)
G1798790 NA non-coding upstream 20983 30170428 ~ 30170707 (-)
G1798732 LOC106582226 other downstream 76106 30071075 ~ 30071764 (-)
G1797936 NA other downstream 169335 29971558 ~ 29978535 (-)
G1797556 NA other downstream 486923 29659467 ~ 29660947 (-)
G1797146 LOC106582182 other downstream 904221 29211664 ~ 29243649 (-)
G1798781 NA other upstream 10789 30160234 ~ 30160686 (-)
G1798869 NA other upstream 337544 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 811642 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 827449 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 889748 31037006 ~ 31042302 (-)

Expression


Co-expression Network