G1798809


Basic Information

Item Value
gene id G1798809
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30201041 ~ 30203286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058497
CTTAACAGCTCCTTTATTCAGGTCTCCAACATTATTCAAAGCAAAACAAATAAGTGCTAAAAGATTAAAATCACACAATTCTCAAACACAAGATAAAGACAGATTCCTTAAATAGAAGACCGTAGTATTCTGTATACCAACTTGTATCATCATTACTCAAAACATGATCAGATTGGTAAAGTGCTTCTCCAAAAGAGGCCTTGTCAAGACAATGATATTCAGAGCAGTTAGTTGGCTAAAGGACACACAGATCATGGGACCAAGCTAATCAGAAAGTGCTTCTCTGAAGTTTAAGTCTTCGACTGtgaagctgtactgggctggcctggttacgcatccaccatagttgctggagCCTTGTTGGAAAGGACAATATGAAAAGAAAATATGATGGCCAGCACAGTACTGTTCGGGTCGGCCCTATAGTGTGACGCAGGTACTGGGTTCTCCAATTGTGATCTTGGAGAGctgctgggtgtgcaggcttttgttccagaccTGCATTAACAGCACAGTtcacccagtagctctccaggacggGCGTTGGAGACCCCTGACAGTCTCCATGGTGAAGTGTGTGACAGTCCTGCCTAAGTCTAGAGCAGGGGTGGGCAAACCTTAATTGCTCGAGGGCCACATCGGGATTTTGAAATTCAACAATTGGGGGACCAATTGTTTGTTAAAATCAATTTGGGGGCCTcctgcattgcagtgcttgaggcatcactacagacccgggtttgatcccaggctgtgtcacagctggccgtgactgggagacccatgaggcggtgtacaattgacccagcgttgtccgggttaggagagggtttggcaggccgagatttccttgtcccattgtgctctaacaactcctgtggcgggccgggcgcatgacacagtcgccaggtgtatggtgtttcctctgacacattggtgcagctggcttccgggttaagcgggcattgtgtcaagaagcagtgcggcttggctgggtcgtgtttcggatgacgcatggctctcgaccttcacctctcccgagtccgtacgggagttgcagcaatgggacaggactgtaactaccaattggataccatgaaattggggagaaaagggggtatgTCTCACGGGCTGGATTGAAGTGTCCGGCGGGTCActactttacccccccccccccagctatgtccaaaatggcacTAGTAGTGAGATAGAATCGTGATCAGGCCTGCCAGGTGAACCATCTACAGAGCAGTACCCTGCAATTATATCTGCGACCCTTTGCATGCAACAAATAaactctgatttgatttgataaatgtTCACATTCATTGTTACATTTTAGACAACCCGCCGGTAAAGGTCTCCAAGCCCCCAAAAATACCAAGCAAACACACAACAGGGGCGACATCTTCTGTCCTCTTTGCCAGCTCTCATACAGCTTCCACTTGCCAGCTCTCATTCAGCTTCCTGAACAACACTACTAGCCAGGTGGTCCGGTCTGTTGCTGCTTTAGCCAACTCATCTCGGAGTTCCTTAATTGTTACCCCAAATGTGTATGGCTTGACAATGATAGAAGAGTTGGCTACATTCATTATGGAACCAGGCTAAAAGAGTTGGCTACAGCACAATCAACATGGGACCAGGCTAAATCAAGAAACCAACAACAAACAAAGGTACCATTTCAAATAGAGGAGCCATTTTGTCCAAAATAACCTAGGAAATAATAATCATGAGCTGTGCCTATACACATTGTTTACGATAGATCCATATAAATTGCGCTGCCTTCTCATAGACAACATAGAATGAGGTTCTGAGCTACAATACAGTACATCCCAGTACTAGTATTAGAAGAAATAGGCCTACATTGTTTCAGGTGCGGTTTAGTGGACAGAAAATGTCACCCCTTTAAACAGATTACAAATGTGATCATTAGAAGACACAGAGATACTACTGATTGGTCTCACACTCTAACGTGGTACTGAAGGTTCATAACCCCACACAACTATCTCACAGTTGTACAGCTATATCAGTTCAAGGCCTAAAGATTGAGACAAATCTGTGTTtgagtgtatgcgtgtgtgtgtgtgtgtgtgcgttgtggGAAACTCTGCTGCTGGTCCTGGTTCTTTTCCAGTGGAATCTCAGATGATCTAGGATGAATTAGTCAGCAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058497 True 2173 lncRNA 0.46 2 30201041 30203286

Neighbor

gene id symbol gene type direction distance location
LOC110501718 LOC106582166 coding downstream 205395 29940139 ~ 29995646 (-)
pou1f1 pou1f1 coding downstream 324483 29873260 ~ 29876558 (-)
LOC110501714 LOC106582170 coding downstream 354585 29835498 ~ 29846456 (-)
LOC110501713 LOC106582171 coding downstream 430191 29745369 ~ 29770850 (-)
tnfsf11 LOC106582173 coding downstream 473300 29706812 ~ 29727741 (-)
mxra5b LOC106582197 coding upstream 89824 30293110 ~ 30322552 (-)
LOC110501725 LOC106586504 coding upstream 161319 30364605 ~ 30382857 (-)
mab21l3 mab21l3 coding upstream 195889 30399175 ~ 30402935 (-)
si:dkey-67c22.2 LOC106582233 coding upstream 199916 30403202 ~ 30414069 (-)
LOC110502089 LOC106582237 coding upstream 253548 30456834 ~ 30459539 (-)
G1798790 NA non-coding downstream 30334 30170428 ~ 30170707 (-)
G1798789 NA non-coding downstream 30920 30169913 ~ 30170121 (-)
G1798787 NA non-coding downstream 33589 30167240 ~ 30167452 (-)
G1798782 NA non-coding downstream 39837 30160985 ~ 30161204 (-)
G1798780 NA non-coding downstream 41448 30159305 ~ 30159593 (-)
G1798810 NA non-coding upstream 789 30204075 ~ 30204371 (-)
G1798813 NA non-coding upstream 8212 30211498 ~ 30211721 (-)
G1798824 NA non-coding upstream 93377 30296663 ~ 30296920 (-)
G1798864 NA non-coding upstream 155952 30359238 ~ 30359802 (-)
G1798781 NA other downstream 40355 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 129277 30071075 ~ 30071764 (-)
G1797936 NA other downstream 222506 29971558 ~ 29978535 (-)
G1797556 NA other downstream 540094 29659467 ~ 29660947 (-)
G1798869 NA other upstream 283703 30486989 ~ 30519672 (-)
LOC110502090 LOC106586488 other upstream 757801 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 773608 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 835907 31037006 ~ 31042302 (-)
G1801195 NA other upstream 2500514 32703800 ~ 32704323 (-)

Expression


Co-expression Network