G1798870


Basic Information

Item Value
gene id G1798870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30450697 ~ 30490914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058566
ggctttataaatacatttgattgatttgattgattgatgagctGAATCTCTACATGGAAACATAAGCCCAAGCATTCACATGAAAAAGAGACACATCCTGTCTTTCAGTTACCTCATATCAATTTAATCAAATACAAACATCAGCAGCAAGACAACAAGAGGAACTGTAATTATGGAATGATATGTACACATCTCTACTCAGGAtgacctgtacccagatcagCTTTTGATCCAAGATGAGACATGCAGTAATGATACTCCTATAGGACTAATGATCTTCATTAATCTGCTGCTTGGACACACCACGCACATCAAGACCTGAGGGGAATGCCACAAAGCAGGATCAAGGAGTCACACACAGTACAGCAGCTACATGTGAGCATCATACAACACCACACAGAAGCACTAGCCTGGGATCAAAACAGCTCCTGTATTAACAACACTGTTGCCAATGACAAAACATTGACATAAGCAGAAAAACAGACTGGTATCCAGGCTACAAAACACACCTAATAATATTATCATCAAGGTATTTCAAATCGTAGGGCAGTCATTCAGATAATGTAAATCAGTATTGCTGTATGAATCAGCATGGAACACACATTTTTACCGCCAACAATGATAACAGATATTGTTCTTTACTGTACAGAGGGCATTAAATGAGGACACGAATAGGGATAGTATAATTATTCAATCCAGTGATTGACTACTACTGTAAATAGCACTAGAGCCTGAGAGCCATTCTCCACCAGTAGATATGCATTAGCCTAGGCCCAAGATGTGTGGCTGATTATTAAAATAACATGCTAGTACTTGTGAAAAATGACAATGGGTAATTAGGTTTTATATCCCAAATATCAACATGCAGACAGATTGTTGTTTTACAATCGTGGTTCTGTCtaaaaacaaatccaaaagcaaATCCAGTGATTGAACTTAACTTGAACTATATTATATCCATAATAACCATCAATACAATTTGAGAATGCACTTTACACGTGTGGTGTAGTAGGCTACATGAGAGATGTCTAGCTTTGAGGCACCAGTAACACACAGCAATAAATAAACTCATAACACAAATACATTTGACACACAGCCACTAACATATCACCAGTCTGTTATACGTACGCAATAGAAAAATCTAATATTTTCAGACTTCAACCATATGTCATTTGTAGATAACAACATATTGCAAGTGTATGCATTGGACAAAAAGTGCTTAGCTATGATTTTGTTCTCTTAGAAATCAAACCGTAACAACTGAAGTGCAAAGAAACTAGAGATGACACGTGGTGAATAATGTTTTGGTCCACCACCAAAGTCCAAAGAGTCGTAGGTGACATTTCAATAACAACTCTACAATAGAGTCAAAATAAATCATAAAAATATGATTGGAATTAACTTGTTCTTTACAATTTATCATTTCAATTGGCAAGCCTAATCAAGAACTTCAGTTAGCAAATCAATATTAATTTGAAAATTTTTTACTAAAGAATGAAATGTCTTTCTCCACGTCTCCTACATCTGTGGTCGTCAACCGTTACCCGACAGTGAGATACCACATGTAGACTTGTTCACCAGTCGTGTGTATGTATGACTACAGGAGAGCCTATAAGCTAGGTGACTGCCAAAGTAAATGGAAACaattgagtaaatgagggatacaaagtatattgaatgCAGGTGCTTCCACCCAGATGTGGTTCCCGAGTtaatttggggtggcagggtagcctagtggttagagcgttggactagtaaccaaaaggttgcaagttcaaatcccccagctgacaaggtacaaatctgtcgttctgcccctgagcaggcagttaacccaccatcattgaaaataagaatttagaataaaggtaaaataaaataaataaataattaagcaattaacatcccatcatgcttagggtcatgtacaaaaatgcccagttgcccaatTATTTTGGCTAGCATGGTTAGAAGAAATCTTAGTGAATTTGAAAGGTGGGTCTCAATTGAGCATAGGCGATTTAaactgtgtgtctcagtcaccacatctcaacccaattgaacactggagtggcgcctgagacagcCTTTtcaaccaccatcaacaaaacaccaaattacaGATGTCCTGTGGAAGAATTGTGACACTTCCCTCCGAAAGAGTTCCAGAGACTTAGAATTTacgccaaggcgcattgaagctgttctggcagcttgttggcccaatgccctattaagacaatgttggtggttcctttattttggcagttatctgTAGGCTATGAACTCTTCTGACACCTCAACTGAAACAGGGTCCACCCAGAAACAGGGCTATTCTACCCTCCACCTGCTGCTTCTATGTACAGCAGCTAACAAGCAAAGAGCCAATCAAAACAGGATGAGTTATAAGaggtcaactttgggaccttctTAAGTTGTGATTATATTAGAGTATTCCATCTTGGTACTGTACATACTCCAGGTTACATATCTCACTGATATTCATATAACCCCAGtacatttttttataattttattttaattttttcaCCTACTTTTTTTCATGCTCTGTTTGCCATAGTGAGAGCTGCAATATGATATGAGGAAGGCActtaaatataatatttttatttGCCCGACTAGCTGTATGTGTTGTTCAGCAGGTAGCCTACACGGAGTTCATTTTACTATGGATCCATTGTTTTAAATATAATAAACCAAAGAATATAGGGAATTATATATGCACAATAACATTTTAGTTGAAGTTCCAAATGTTGTTCCAGAGTGACCTACTGTTGGTAAGGGGGATCCATAAAACTAACAAAAAAATGCTCTTTCATAGTCCTGATACAGCACGCATACCTTCGTCCTCTTCAAGGCGTCTCTATTCCAAATCTTTCCATCCATATCGGGAGCCAGAGTACAGCTCTTCATCAGAACATTTAGTCACCAAGAGGGACAAGGGCAGGCAAGAAAGGCCTGGTGTTTCTAGGTTCTGTGGATGTTACtattgttgtggtggttgttCTTGTGGACATTACCACCTCCTCTCAGGATGACGGCCACCGGTAAGCTCTCACCTGATAGGTGGATGGAGCTCCATGATGCTCCATCAACAATGACCTTCAGGACACCACTGGAGTCATGTCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058566 True 3154 lncRNA 0.39 2 30450697 30490914

Neighbor

gene id symbol gene type direction distance location
si:dkey-67c22.2 LOC106582233 coding downstream 36628 30403202 ~ 30414069 (-)
mab21l3 mab21l3 coding downstream 47762 30399175 ~ 30402935 (-)
LOC110501725 LOC106586504 coding downstream 67840 30364605 ~ 30382857 (-)
mxra5b LOC106582197 coding downstream 128145 30293110 ~ 30322552 (-)
LOC110501718 LOC106582166 coding downstream 455051 29940139 ~ 29995646 (-)
LOC110501733 LOC106582237 coding upstream 9737 30500651 ~ 30506420 (-)
LOC110501729 LOC106582237 coding upstream 51369 30542283 ~ 30552051 (-)
esd estd coding upstream 204090 30695004 ~ 30702692 (-)
htr2aa LOC106582206 coding upstream 241404 30732318 ~ 30759313 (-)
LOC110501738 LOC106582245 coding upstream 397739 30888653 ~ 30908521 (-)
G1798910 NA non-coding downstream 24863 30425573 ~ 30425834 (-)
G1798864 NA non-coding downstream 90895 30359238 ~ 30359802 (-)
G1798824 NA non-coding downstream 153777 30296663 ~ 30296920 (-)
G1798875 LOC106582240 non-coding upstream 25419 30516333 ~ 30559449 (-)
G1798989 NA non-coding upstream 119021 30609935 ~ 30610365 (-)
G1799126 LOC106582246 non-coding upstream 450412 30941326 ~ 30943931 (-)
G1799189 nek5 non-coding upstream 465826 30956740 ~ 30956989 (-)
G1799194 NA non-coding upstream 473813 30964727 ~ 30964949 (-)
G1798781 NA other downstream 290011 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 378933 30071075 ~ 30071764 (-)
G1797936 NA other downstream 472162 29971558 ~ 29978535 (-)
LOC110501714 LOC106582170 other downstream 607517 29835498 ~ 29846456 (-)
G1797556 NA other downstream 789750 29659467 ~ 29660947 (-)
LOC110502090 LOC106586488 other upstream 470173 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 485980 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 548279 31037006 ~ 31042302 (-)
G1801195 NA other upstream 2212886 32703800 ~ 32704323 (-)
G1801071 NA other upstream 2268944 32759858 ~ 32777777 (-)

Expression


Co-expression Network