G1798869


Basic Information

Item Value
gene id G1798869
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30486989 ~ 30519672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058564
ACAACACCAATGATATGTTTTATTGAGCCTGTGCAGACCGTGGAAAACAGTAAATGGAAGAGGATGTTTACACGCCACAGATTACCGTCTAAGATCAGCATATCCCAGGCATCTTATACGGGATTCTCATAACCGGGATACAAGCTTTTTCAGATTATTGTAAACGGAATATGACGTTTATATGCATCAACTCAAAAACAGAATACTTGAGTATCCCGAATAATAACAggatattggtgtgcatgtaaatgtCGTCAGTGTTAAAAAGACGTAGGCCTATTTGGTAATTGTAAAACAACTGAAAAACATTTTTAAGAGTGCTTTCTAAAAGCTCTACTTCCTTATGATTAGGCATGCTAATTACTTATTCAAATGACGTACAAAAAAAACTAACATCAAATAAAACCTTGACTGAGTGCTTAACTTAAATCCATGAATCAACTATCAGTAAATACAGATTCAATCAATCCACGTCTATAAAAATAATAGCTCGTCATCCTCCTCGGGAACCTACATCAGAACCACTTAGACAGCCATTTCACAGCCATTCCTCCTACTTTGGGAATTATTCCTGGAAGGAACAAGGCAGCTGCAGTCCCAACAGTATCCAGAGCTGTGCTCATAAATGAGGGGTTTTTCTCTTCCTCTTGTGCCTTCGCACCCTTAAGGGCATCTATCTCTCTTTGCATTTGGTGTGCTCTGTCATCAAACCCTTGCCGGAGAaggtcattctATCTCTCTTTGCATTTGGTGTGCTCTGTCATCAAACCCTTGCCGGTG
>TU2058565
catTAATAAACAGAATATTCCTCATTTAAATTcatatgggttaaatggaatagtaactgaaaATCGGAATACTGACTCTAGGCCTATACCACTCACATgtagtgtaatataatattaacacCTACTGAATtatgcatttcttgcagtaaaatgatacaataaatgttagttttgtcTCTTGAGAAAATTTGAATGTGTTGTTATGACATTGTTCTGCCTCCAGACAGTTTTTCAAACacatgaacacaaatacaaacaccAATAGTTCCACAGTTTTGGAGTTATTGCGTTTTCTCCCTGGTTCCTAAACCAAACAGACAACTATACCGGTGTTAACTACATTAATAATGCATTCATGCTATCTATGTAAGACATGATTCTGGTGAGCACTACAATATTTAGTCATGACAGACGAGAAGCTGCATGGATCTAACTATAGTTGACAAACAAATGGCCAACCAAATCTCAGAAATTATAGGCACAAACGTGTCTAAATTAGGGGTGAAAGTAGCTAGTAGGCTATACGGTCCAGTACGGAGTATCAGCAAAATAAACTATCATGGTGGATTGAATTGCACTGGTAGCCTACTTTTTAAAGTGATTtctttgacaatcagatgaaaacatcatcacACAACACCAATGATATGTTTTATTGAGCCTGTGCAGACCGTGGAAAACAGTAAATGGAAGAGGATGTTTACACGCCACAGATTACCGTCTAAGATCAGCATATCCCAGGCATCTTATACGGGATTCTCATAACCGGGATACAAGCTTTTTCAGATTATTGTAAACGGAATATGACGTTTATATGCATCAACTCAAAAACAGAATACTTGAGTATCCCGAATAATAACAggatattggtgtgcatgtaaatgtCGTCAGTGTTAAAAAGACGTAGGCCTATTTGGTAATTGAAGAAAAACTGATTTTCAGATGGGTAGATGTCACATCACTGCAAACGGAGTTGATTGAGCTGCAAAGATGGTGCTTGCAGCTGATGTCCCAGTTCTCAAGTAACTGGCACACGCCGTACAGCTGTCAACCGAAGTCAGCATGCATGTGCTCAGCTGCCACAAGGAGTTGCAAGAGCACTATGGGACAAGCACATcacagccggccaaaccctcgaTTGTGCACTAtacatgggtctcccagtcgcgacacagcccgggatcgaacccagatctgtagcgacacctctaacactgtgaagcagtgccttagaccgctgcgccactcaggaagcCCTCCACAATTAACTTCATTAAAAACAAATACCGCACCAGGCTCACCAGTGTCTCCGAGTTGCTCTCATGCACACCATTTGTGCCAAATTTCAAAGCATTGGCAGGAGACAAAAAGTGGAATTtctctcatcaaatcaaatcaaatgtatttgtcacatacacatggttagcagatgttattgcaagtgtagcgaaatgcttgtgcttctagttccgaccatgcagtaatatctaacaagtaacataacctaacaattccacaacaactaccttatacaagtgtaaaggaatgaatatgaatatgtacatacgagtacataaaaatatataaatgagtgatggccgaatggcataggcaagatgcagtagatggtatagagtacagtatatacatacgagatgagtaatgtagggtatgtaaacatataaagtggcattgtttaaagtggcttgtgatacattacatcaagatggcaagatgcagtagatggtatagagtacagtatatacatatgagatgagtaatgtagggtatgagaacattatataaagtgacattgtttaaagttgtcacgccctgaccttagagatcctttttagaataagaatagctgacaaattcacccaaatgtacatttctctcgtgtactttctctttttctctcttttaaatccccattttgggtaacacgcgccaCAGTGTGTTGGCccattatactaagttctaatcaatagcctagaatgtgtttttgtgtatgtatatattttatcatcattttagctttctagtaaataaatactcaactaagattggtgtggtaagaactcattggtgagacccgggtccgtgcagattcacggattatgcgacgttcagaacgagactgTAGAGTTAACCGATTAATTAGCGGCtcttgtaaaatcgatattctgatattctttgagttaatttgggaaatagaaactcaataaaactaattttcccatggtgccccaggttaatgttAATAATTACTTGATTTAGTTCATCACGCAATTAAAAACCTTTAATCATTCAATGAGCAACAGTCACGACGCAATATACGTCAAGATTTTTCGGGTTATTGTAAATGGGATATGACGTTTATATGACTCAACTCAAGAATAGAATACTTGAGTATCCCGAATAATAACAGGATATTGGTGTGCATATAAACATCATCAGTGTTAAAAATTAGGCCTATTTGGTAATagtaacatttaaaaaacaccTGTGCAAAACCATTTTTAAGTGTGTTTTCTAAAAGCATTAGTTTACCATAATTAGGCATTCAAAATGTTTATTAAAAAACATAAACTAAAACCTTAACTGAGTGCTTAACCTAAATCCATGAATCAACTATCAATAAATACAGATTCAATCAATCTATAAGAATAATAGCTCATCATCCTCCTCGGGAACCTACATCAGAACAACTTAGACAGCCATTTCACAACCATTCCTCCTACTTTGGGAATTATTCCTGGAAGGAACAAGGCAGCTGCAGTCCCAACAGTATCCAGAGCTGTGCTCATAAATGAGGGGTTTTTCTCTTCCTCTTGTGCCTTCGCACCCTTAAGGGCATCTATCTCTCTTTGCATTTGGTGTGCTCTGTCATCAAACCCTTGCCGGTG

Function

NR:

description
guanylate-binding protein 4-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058564 False 780 lncRNA 0.40 2 30486989 30519039
TU2058565 True 2909 TUCP 0.38 3 30486989 30519672

Neighbor

gene id symbol gene type direction distance location
LOC110502089 LOC106582237 coding downstream 27450 30456834 ~ 30459539 (-)
si:dkey-67c22.2 LOC106582233 coding downstream 72920 30403202 ~ 30414069 (-)
mab21l3 mab21l3 coding downstream 84054 30399175 ~ 30402935 (-)
LOC110501725 LOC106586504 coding downstream 104132 30364605 ~ 30382857 (-)
mxra5b LOC106582197 coding downstream 164437 30293110 ~ 30322552 (-)
LOC110501729 LOC106582237 coding upstream 23244 30542283 ~ 30552051 (-)
esd estd coding upstream 175965 30695004 ~ 30702692 (-)
htr2aa LOC106582206 coding upstream 213279 30732318 ~ 30759313 (-)
LOC110501738 LOC106582245 coding upstream 369614 30888653 ~ 30908521 (-)
LOC110501740 med4 coding upstream 389633 30908672 ~ 30913576 (-)
G1798910 NA non-coding downstream 61155 30425573 ~ 30425834 (-)
G1798864 NA non-coding downstream 127187 30359238 ~ 30359802 (-)
G1798824 NA non-coding downstream 190069 30296663 ~ 30296920 (-)
G1798989 NA non-coding upstream 90896 30609935 ~ 30610365 (-)
G1799126 LOC106582246 non-coding upstream 422287 30941326 ~ 30943931 (-)
G1799189 nek5 non-coding upstream 437701 30956740 ~ 30956989 (-)
G1799194 NA non-coding upstream 445688 30964727 ~ 30964949 (-)
LOC110501745 lrrc63 non-coding upstream 446427 30965268 ~ 30967749 (-)
G1798781 NA other downstream 326303 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 415225 30071075 ~ 30071764 (-)
G1797936 NA other downstream 508454 29971558 ~ 29978535 (-)
LOC110501714 LOC106582170 other downstream 643809 29835498 ~ 29846456 (-)
G1797556 NA other downstream 826042 29659467 ~ 29660947 (-)
LOC110502090 LOC106586488 other upstream 442048 30960714 ~ 30963603 (-)
G1799132 LOC106582249 other upstream 457855 30976894 ~ 30995302 (-)
LOC110501748 LOC106582253 other upstream 520154 31037006 ~ 31042302 (-)
G1801195 NA other upstream 2184761 32703800 ~ 32704323 (-)
G1801071 NA other upstream 2240819 32759858 ~ 32777777 (-)

Expression


Co-expression Network