G1798168


Basic Information

Item Value
gene id G1798168
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30500656 ~ 30545954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057803
tgcaatttatatttaatccaccagaaaagacagaacaaattaTACAACAAATTGTGGTTAcgctcaaatatactaattgatcaAAAACAAAAAAGTATCATCTTCGTAAaagatatcataaataggactggtggagttatgtcacacatgcagctaacaaaaacatatggaaatgtctgcccTACCCAAaactacaaccaactaattgcagcattaccgctaACATGGAAGAGGAAAGTGGAAGGGGGGAAATTAAGAAATGGTCTATCTGTGTACCTGCTCAAGTAATACACAATGTTTTTACTTCCTAAAAGCTACCTTCATGAGCTTATATTGAAGTAAAATGTTGGCAGCGTCCATTCCAAGTCGAAGAACAGGCATGACTGTAGACTCAAGGAAACCACCTCCTTCCTTCTCAGGTTTGTTGCTATTCTTGAACTCCTCTATCTCCTGTCTCATTAAGTCAGCCTTCTCCTTGTGGCCCTTCTCCAGCAGATCCTTCTGCTCCTGCATCTTGCACTCCAAGGCCCTGTGGAAGTCCCGTTCCTGTTGCTTCATCTCCTCCTTCATCTTCTCTTCCATCTGCTTCAACTTCTCATCTTTGCTTCTGCGATCGTCCTCCATGGTGCGCTCCATCTCCAACCGTTTCTCTTCAGCAGCCTTCTTCTCCTGCTCCAGCACAGCtgatctctccttctc

Function

NR:

description
Interferon-induced guanylate-binding protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057803 True 699 TUCP 0.43 2 30500656 30545954

Neighbor

gene id symbol gene type direction distance location
LOC110501732 LOC106582240 coding upstream 13042 30470412 ~ 30487614 (+)
LOC110501728 LOC106582235 coding upstream 46898 30435323 ~ 30453758 (+)
arsh LOC106582230 coding upstream 282715 30213664 ~ 30217941 (+)
LOC110501723 LOC106582229 coding upstream 297364 30178719 ~ 30203292 (+)
LOC110502086 NA coding upstream 375135 30120858 ~ 30125521 (+)
LOC110501731 LOC106582241 coding downstream 6407 30552361 ~ 30575546 (+)
trnal-caa-106 NA coding downstream 33542 30579496 ~ 30579604 (+)
trnal-caa-107 NA coding downstream 34052 30580006 ~ 30580114 (+)
LOC110501734 LOC106582244 coding downstream 45915 30591869 ~ 30694906 (+)
LOC110502123 NA coding downstream 161174 30707128 ~ 30708451 (+)
G1798195 NA non-coding upstream 67823 30432608 ~ 30432833 (+)
G1798194 NA non-coding upstream 68141 30428536 ~ 30432515 (+)
G1798191 LOC106581772 non-coding upstream 76345 30424079 ~ 30424311 (+)
G1798149 mab21l3 non-coding upstream 97958 30401673 ~ 30402698 (+)
G1798148 mab21l3 non-coding upstream 100282 30399178 ~ 30400374 (+)
G1798403 sucla2 non-coding downstream 355031 30900985 ~ 30901385 (+)
G1798446 NA non-coding downstream 425657 30971611 ~ 30971848 (+)
G1798447 NA non-coding downstream 430078 30976032 ~ 30976479 (+)
G1798473 NA non-coding downstream 485787 31031741 ~ 31031995 (+)
G1798474 NA non-coding downstream 486925 31032879 ~ 31033235 (+)
LOC118943632 LOC100194703 other upstream 575274 29917773 ~ 29933035 (+)
G1797582 NA other upstream 755802 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1490383 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1516430 28977890 ~ 28984226 (+)
G1795550 NA other upstream 2408540 28091565 ~ 28092116 (+)
G1798397 NA other downstream 342707 30888661 ~ 30891067 (+)
G1798579 NA other downstream 700527 31246481 ~ 31292205 (+)
G1798597 NA other downstream 747598 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1821682 32317123 ~ 32374208 (+)
G1800754 NA other downstream 2364839 32910793 ~ 32914182 (+)

Expression


Co-expression Network