XLOC_003720 (ralbb)


Basic Information

Item Value
gene id XLOC_003720
gene name ralbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43740949 ~ 43743702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007196
ATCAGGGAGCAGATCCTGCGAGTGAAAGCTGAAGAGGATAAGATCCCTCTGCTGGTGGTGGGCAATAAGTCAGATCTGGAGGAGCGACGGCAGGTTTCAGCAGACGAGGCCCGAAGCAAGGCAGACGAGTGGGGAGTTCAGTACGTGGAGACCTCAGCCAAAACCAGAGCCAACGTCGATAAGGTCTTCTTTGACCTAATGAGGGAAGTCCGAACAAAGAAAATGTCTGAAAACAAGGAGAAGAATTTAAAGAAGGGCGGCAAGAAGAAGAAGAGTCTGAAAGAGAGATGCACACTGCTGTGATTGACCCGTCCAGCTCTCCTGTCCTGAACTGAGCCGCTCGGAggaaaataatgatgatgatgatgatgagcagATCTTCTTCATCCAGCTTTTCTGATGCCAAACACAATCATAAGTCGAACTCCAGCTCTCCAGCAAAGGGCTTTTGCACATTTCTGCAGACCAGCGTGTTATTAAAATCAGTAGCGTAACTCTAATCTGTGGGACTTTCACAATCTCATTATTCTAATGCAAACTCCAAAAACACACAATATTAATGATGCTGCATTATTGGGCCTCACGAAACAAGAACTGAGTCAGTTGTTGCGttcaattaaagggacagttcacccaaaaatgaacacgTATTAGTGGTTTCAACATTtttaggagtttttttttctgctaaagaataaagaagatattttg

Function

symbol description
ralbb Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-121 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).

Ensembl:

ensembl_id ENSDARG00000113643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007196 True 711 mRNA 0.44 2 43740949 43743702

Neighbor

gene id symbol gene type direction distance location
XLOC_003719 gli2b coding upstream 27199 43661735 ~ 43713750 (+)
XLOC_003718 CABZ01073015.1 coding upstream 94275 43643158 ~ 43646674 (+)
XLOC_003717 NA coding upstream 205059 43532582 ~ 43535890 (+)
XLOC_003716 slc29a1b coding upstream 282337 43419809 ~ 43458612 (+)
XLOC_003715 vipb coding upstream 326777 43401201 ~ 43414172 (+)
XLOC_003721 zgc:153431 coding downstream 7561 43751263 ~ 43787153 (+)
XLOC_003722 NA coding downstream 67927 43811629 ~ 43817356 (+)
XLOC_003723 NA coding downstream 77853 43821555 ~ 43822853 (+)
XLOC_003724 NA coding downstream 200180 43943882 ~ 43950660 (+)
XLOC_003725 FP016005.2 coding downstream 281060 44024762 ~ 44024878 (+)
XLOC_003369 CR854846.2 misc upstream 27617867 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31028953 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31046686 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31055350 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31060921 12679732 ~ 12680028 (+)
XLOC_003712 CABZ01058277.1 non-coding upstream 443316 43295275 ~ 43297633 (+)
XLOC_003710 CABZ01080006.1 non-coding upstream 663608 43070883 ~ 43077341 (+)
XLOC_003709 CABZ01092982.1 non-coding upstream 696000 43044826 ~ 43044949 (+)
XLOC_003727 NA non-coding downstream 419628 44163330 ~ 44196871 (+)

Expression


Co-expression Network