G1799132 (LOC106582249)


Basic Information

Item Value
gene id G1799132
gene name LOC106582249
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30976894 ~ 30995302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058850
CCCTGATGTCTTTATTTTCAGTCTGAAAGCAAAATGGTCTCTAATTAAAATTGAAAACAATATCATTAATAGCATCAATTAAAGAAATAAAAAGTAAAGTTAGAAAGAGCTTAATCTCGTATCAAAATAAGATGCTCGACTTTCTGATATCTGTGGTATATTTCTAGTATTATCTATTTTTATCTGCTCTTTGCTATATTAGGCCTGAGTTTTGAATCCCTGATTTCCTGACATACTAGCTATATTATTGAAATTGTCTTGTGAGCTAGTATCCTCTTTTCCCTGATTCTGGTTGTTGTGCTGATAACAGCTTCAGGTGATGTGTTCTGTGGTGTCGTGACCCCTACACCCTCTTCATGCCCCGGGCCATCAGGCAGGCGAACACCGTCATCACCATCTTAGGTTTGACCTCCACTAGGTCCTCAGGCAGGGCGTACACCCGCGCTCCGATCTTCCTGGCCATGGAGATGGCATACTTGGCGTTATTGAGCTTCTCCTCCTCAGTCAGGTCCTCCACTTTGATTAGATCATAGCGGATAGAGCCTGGCTGGATGGCATCAATCAGGTCCAGGACTGGCATACTGGTGACAATGGACCCATCCTTGAATCCAGAGATGGTGCCTTTGCCAGCCTGTGTGAGTGTATCGTTGACCCAGGTGACGATGGTGTCGTCATTCACCTTCTGCCCATCACCAAGCTCCTCCAGAATATTCAGTGTGTAcCTCCTCATCAGCTGCCACAGCAGGGCCTGGGTGAGTTTTCGGTTGCCTTCATTCAGGTCCTGTCCAGCGATGCCAACCAGGGAGAACTTGGCCTCCTTCTTCCCCAGCTCCACTGCATAGTTACAGTTCTCCAACTTCTTCATGTTGCTGCCCAGTTTGGAGTAAGGGGGTTTGTTTACTCTGTCCCAATCCACTGGCACATTTATCTTCTCATAGAGCTGGAAGATGACCAAAGCATCATCTATGTCCACATAGAGGTGGTTGACACGAGGGTTGACCCCCAGTGAGTTCATCCAGTTCCTGAAGGTGCGCTCCTCTCTGGTTTCACCCTCGATGGAGCTCCAGTCGATGTCCTGGTTCTCAGGCTTcttcagggcagggtacttgTTGAACAGGTTGGCAATGTATGCTAAGTTTAGCTTAGGGTTGCCGCGGACCACGTCGGTTGCCGTGACGAACTGCCGGCAGCCCAGACGGTCAGCCTGCTCCAACATGCACTCTGCTCTCTTTATGTCCTCTTTCTCCCTTATCCCTGAAATGTCAATGGCAATAGGAGGGattccctcctcatctcccttagGGGCCACTTGGTTCAGGATGTTGTAGTAGGCCTTGGAATCCTTTATGTCAGAGCTGAAGTTGTTGATCTTGGAGCAGCCGGCCTCCTCTAGGTGATAGTTGGCCCAGCGCAGCAGCAGCTCCTCTGGGGAAAGCTTCATCAGGTCTTCCAGGCTCTCCCCATCCCTCAGCAGGGCTATcagagcttcgttCCTGCTGATCTCGATGTCAGCAAACAACCCGATCTTGATGACTTGCCAGAGCAGGCCCAGGACCAGATGCTGTCTGCCTTCCTTCAGGTCCTCTGCTCCGATGTTCACCACGTGGCAGCCAATGGCCGACGCAGAGTTCAGAGCCAGGTTCAGATTCTCCTGGATGGTGAAGGGTGTGAGCTTCTTCTTGTTGATGGTTCTTTCATCGATGGTGTCCGGAACAGACTGGTTGATCATCTTACATAAAACGATCCCATCTCCGACAGCGGTGAACAGGTCATTAGTGGTGGGGTCCATGGGGAGGACATGTTTGCAGTCTGGGTCTTTCTCCAAGGCCTTATTCACCCAGTTCACAAAAgccaccttctcctcctCTGAGTAGGAGTGCTGTGTGCCTGACTGCTCTGAAGTTCCTGCTACGGCATAGATGCCCTCCTTCTTGTTGATGGCTTTCTTGAAGGTCTTAGCAACTTCTGTACTCTTCAGTCCATGGACCACATTAGCAAACTCGCCGAAGGTGACTTTGCCGTCATGCAGGTCTCCTGTCTTGGTGAGATCCTGGATGATCTCTCTGACTCTGTATCCCGGCAATGGCAGGTTGGCAGCTTTGAACAGGTCATTGAGCTCTTCTGTGCCAATGTGGCCATGAGAGTCCACATCGATCTTAGCAAAGGCTTCTCTCAGTTCTTCCAACTCATCTTGAGAAATCTGTGGTGGAGCAGCCATTTTGTGGGATCTGAGGGAGGTGAGTTGACTGGCGGATctgtctgtgagtctgtctgtgtcacTTTCCTTCCTTCAGTGTGTCTGCTGCTCTCACTGCTTGACAGGCAGGCAGTGCACTGTCTCTCCCTCAGAAGTCAAGCGACAATGAATC

Function

NR:

description
plastin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058850 True 2369 TUCP 0.50 16 30976894 30995302

Neighbor

gene id symbol gene type direction distance location
LOC110501745 lrrc63 coding downstream 9145 30965268 ~ 30967749 (-)
LOC110502090 LOC106586488 coding downstream 13291 30960714 ~ 30963603 (-)
LOC110501740 med4 coding downstream 63318 30908672 ~ 30913576 (-)
LOC110501738 LOC106582245 coding downstream 68373 30888653 ~ 30908521 (-)
htr2aa LOC106582206 coding downstream 217581 30732318 ~ 30759313 (-)
LOC110501744 LOC106582250 coding upstream 22 30995324 ~ 30999592 (-)
LOC110501746 LOC106582248 coding upstream 9397 31004699 ~ 31022949 (-)
LOC110501748 LOC106582253 coding upstream 44588 31037006 ~ 31042302 (-)
frzb LOC106582261 coding upstream 292985 31288287 ~ 31292216 (-)
LOC110501754 LOC106582262 coding upstream 300598 31295900 ~ 31363691 (-)
G1799199 NA non-coding downstream 1715 30974877 ~ 30975179 (-)
G1799197 NA non-coding downstream 3639 30972860 ~ 30973255 (-)
G1799195 NA non-coding downstream 6854 30969810 ~ 30970040 (-)
G1799194 NA non-coding downstream 11945 30964727 ~ 30964949 (-)
G1799125 LOC106575914 non-coding upstream 5270 31000572 ~ 31003643 (-)
G1799213 NA non-coding upstream 38005 31033307 ~ 31033531 (-)
G1799216 NA non-coding upstream 40318 31035620 ~ 31035859 (-)
G1799218 NA non-coding upstream 48753 31044055 ~ 31044440 (-)
G1798869 NA other downstream 457222 30486989 ~ 30519672 (-)
G1798781 NA other downstream 816208 30160234 ~ 30160686 (-)
G1798732 LOC106582226 other downstream 905130 30071075 ~ 30071764 (-)
G1797936 NA other downstream 998359 29971558 ~ 29978535 (-)
G1801195 NA other upstream 1708498 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1764556 32759858 ~ 32777777 (-)
G1801352 NA other upstream 1955165 32950467 ~ 32953670 (-)
G1801331 NA other upstream 1963020 32958322 ~ 32960485 (-)

Expression


Co-expression Network