G1799371 (LOC106582260)


Basic Information

Item Value
gene id G1799371
gene name LOC106582260
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31255653 ~ 31257047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2059113
CTGCCTCAATCTCAGTGAAGACATTGCCTTGCCACAGCTCTGTAACTCTGCTCTTCACAAATTGCATGCCAAACTTAGTCAAACTCTCCTTGGCCCTATCTCCAAAGTATTTCTCTGGATTCATTCCAGCTTTGTAAATGTAGAGGCTGGGGTAGCTGTTGATGCCTTTGCTGCGACACAGTCTGTTGTTGTCTCCACAGTTCACTGCTCCTATCCTGATCACTCCATCCATCTCCTTAGCAAACTCCCTCCACGTGGGGGCCAGCTCGTGACAATGATGGCAACGAGGGAAGTAGAAGTTGACAAACCAGAGTTCCCCGGAGTTCACTGCTGCATCGAAGTCTCCCCTATCTAAAGTGACAATCTCTAGGTCATCATCGTAGATACCAAATTCATTTCTATAGTAGTTCCAGCTCTCATATCGTCCTCCTCCCTGCTGCTCATCCTGTAGACCCTTCTCTCCATACTTGTCATACTTCTTCCTCAGATCGTCATCCTTCAGAACTTCATAGGCTCGGGTTACCTTCAGGAACTTGTCATGGGCAGTTTCATCATGCTGGACAATGAGAGCAACAAATTCAGTAAAGGACTTTGTAGAAAATATCTAGCCTGCTACCAGACGTGGTTGTGCTGTTTTGTTGTGACAATGACCATAGAATTAAGAAAAATAgcaaaaacagatctgggaccagtctaggAAATCACCAGTATGTTGTGATATGTTAAAGCCAATGATAAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2059113 True 740 lncRNA 0.45 5 31255653 31257047

Neighbor

gene id symbol gene type direction distance location
LOC110501748 LOC106582253 coding downstream 213351 31037006 ~ 31042302 (-)
LOC110501746 LOC106582248 coding downstream 232704 31004699 ~ 31022949 (-)
LOC110501744 LOC106582250 coding downstream 256061 30995324 ~ 30999592 (-)
LOC110501745 lrrc63 coding downstream 287904 30965268 ~ 30967749 (-)
LOC110502090 LOC106586488 coding downstream 292050 30960714 ~ 30963603 (-)
frzb LOC106582261 coding upstream 31240 31288287 ~ 31292216 (-)
LOC110501754 LOC106582262 coding upstream 38853 31295900 ~ 31363691 (-)
LOC110501758 ppr1c coding upstream 287281 31544328 ~ 31567507 (-)
itprid2 ssfa2 coding upstream 315770 31572817 ~ 31618605 (-)
itga4 itga4 coding upstream 479040 31736087 ~ 31774012 (-)
G1799327 NA non-coding downstream 64636 31190798 ~ 31191017 (-)
G1799326 NA non-coding downstream 65151 31190082 ~ 31190502 (-)
G1799325 NA non-coding downstream 65612 31189728 ~ 31190041 (-)
G1799259 NA non-coding downstream 68270 31097635 ~ 31187383 (-)
G1799218 NA non-coding downstream 211213 31044055 ~ 31044440 (-)
G1799378 NA non-coding upstream 5358 31262405 ~ 31262789 (-)
G1799464 NA non-coding upstream 188616 31445663 ~ 31446022 (-)
G1799657 NA non-coding upstream 325612 31582659 ~ 31583118 (-)
G1799679 NA non-coding upstream 369513 31626560 ~ 31626781 (-)
G1799683 NA non-coding upstream 374337 31631384 ~ 31631595 (-)
G1799132 LOC106582249 other downstream 260351 30976894 ~ 30995302 (-)
G1798869 NA other downstream 735981 30486989 ~ 30519672 (-)
G1798781 NA other downstream 1094967 30160234 ~ 30160686 (-)
G1801195 NA other upstream 1446753 32703800 ~ 32704323 (-)
G1801071 NA other upstream 1502811 32759858 ~ 32777777 (-)
G1801352 NA other upstream 1693420 32950467 ~ 32953670 (-)
G1801331 NA other upstream 1701275 32958322 ~ 32960485 (-)
bard1 bard1 other upstream 3261459 34473620 ~ 34544232 (-)

Expression


Co-expression Network