G1799951


Basic Information

Item Value
gene id G1799951
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32087155 ~ 32088558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2059743
ttaggaacactggaacatgagatgtaatctacacctccattaggaacacaggaacattagatgtaatctacacctccattaggaacactggaacatgagatgtaatctacaactccattaggaacacaggaacatgatgtaatctacacctccattaggaacactggaacatgagatgtaatctacacctacattaggaacacaggatcatgatgtaatctacacctccattaggaacactggaacattatgtaatctacacctccattaggaacacttgaacatgatgtaatctacacctccattaggaacacaggaacatgatgtaatcGACACCTCCATtgggaacactggaacatgagacgtaatctacacctccattaggaacacaggatcatgatgtaatctacacctccattaggaacacaggaacatgatgtaatctacacctccattaggaacacaggaacatgatatgtaatctacacctccattaggaacacaggatcatgatgtaatctacacctccattaggaacacaggaacatgatgtaatctacacctccattaggaacactggaaaattagatgtaatctacacctccattaggaacactggaacatgagatgtaatctacaactccattaggaacacaggaacatgatgtaatctatacctccattaggaacactggaacatgagatgtaatctatacctccatcaggaacactggaacatgagatgtaatctacaactccattaggaacacaggaacatgatgtaatctacacctccattaggaacactggaacattagATGTAATCtatacctccattaggaacactggaacatgagatgtaatctacaactccattaggaacactggaacatgagatgtaatctacacctccattaggaacactggaacatgagatgtaatctacacctccattaggaacactggaacatgagatgtaatctacacctccattaggaacactggaacatgatgtaatctacatctccattaggaacactggaacatgatgtaacctacacctccattaggaacactggacaCACAGCCTATACTTTCTCCTTCTGAACTTTTAATGCAAGTGGGGCGGGTGTGGCTTTCTGACAAtgatcaagagcagctgctcaccgatttgacagcGCCAGCGCAGTTACACCTCCAACGccgccaaaacatcagctatgcggGTGTCGGCTATCGCCACGCAACACTTGATTTTATTGAATCTAGGCTTTAATCTGTGTCCAGACCACCGGCCCCTTATGTTGAAATTATACAGTTGGCTAGACACATCTTGGTCAACTTGTCATAGTTCAAAACAGTCATTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106607957

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2059743 True 1367 lncRNA 0.41 2 32087155 32088558

Neighbor

gene id symbol gene type direction distance location
cerkl cerkl coding upstream 350191 31644420 ~ 31738039 (+)
neurod1 LOC106582267 coding upstream 448557 31635510 ~ 31638598 (+)
pde1a LOC106582264 coding upstream 551634 31458011 ~ 31535521 (+)
LOC110501756 LOC106586411 coding upstream 720344 31364542 ~ 31366811 (+)
dnajc10 LOC106582260 coding upstream 820026 31249607 ~ 31267129 (+)
cwc22 LOC106582271 coding downstream 5616 32094174 ~ 32144432 (+)
znf385b znf385b coding downstream 66737 32155295 ~ 32312355 (+)
LOC110501767 LOC106582273 coding downstream 228565 32317123 ~ 32374208 (+)
LOC110501768 LOC106582274 coding downstream 296854 32385412 ~ 32420120 (+)
LOC110501775 LOC106582275 coding downstream 342540 32431098 ~ 32607822 (+)
G1799909 NA non-coding upstream 78359 32008504 ~ 32008796 (+)
G1799863 ub2e3 non-coding upstream 88841 31944586 ~ 31998314 (+)
G1799871 NA non-coding upstream 130549 31951261 ~ 31956606 (+)
G1799859 NA non-coding upstream 148986 31937151 ~ 31938169 (+)
G1799858 NA non-coding upstream 150477 31934579 ~ 31936678 (+)
G1800724 NA non-coding downstream 722522 32811080 ~ 32811350 (+)
LOC110502125 LOC106582208 non-coding downstream 727546 32811982 ~ 32816908 (+)
G1800759 NA non-coding downstream 814368 32902926 ~ 32903150 (+)
G1800761 NA non-coding downstream 829511 32918069 ~ 32918687 (+)
G1800800 NA non-coding downstream 1082681 33171239 ~ 33176016 (+)
G1798597 NA other upstream 789736 31293552 ~ 31297419 (+)
G1798579 NA other upstream 794950 31246481 ~ 31292205 (+)
G1798397 NA other upstream 1196088 30888661 ~ 30891067 (+)
G1798168 NA other upstream 1541201 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 2161773 29917773 ~ 29933035 (+)
G1800754 NA other downstream 822235 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 3651881 35740427 ~ 35760519 (+)
G1804873 NA other downstream 3786004 35874562 ~ 35875452 (+)
G1805191 NA other downstream 4275038 36363596 ~ 36363930 (+)

Expression


Co-expression Network