G1801333


Basic Information

Item Value
gene id G1801333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32953796 ~ 32956422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2061254
CGTTTCAGGCCTCACCTAGGCAAACTGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTTGTTTCAGGCCTCACCTAGGCAAGACGGAAGACTACCCTCCACCGTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTACACCTTATCCTCATTTCAGGCCTCACCTAGGCAAGACAGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAGGACTGGTCCTCAGGGTTGAGTTTGAAGTACCCTGGTTGACAATGGCAGTAGGCTGTCCCATTGGAGTCGACACAGAAGGAACGCTCTAGGTGACACTGGGTATTCTGGGCCAGACACAGACTCTCAACTGAGGGGCAGAGAGGGGTAGATTAGGATGGGAGAGGGGTAGATTAGGATGGCTGTAGCAGGGTCAGGTATTAAATGTAAAACATGCTAATGTCATACATTGACGTTCATCGTTTTTTGGGCTAGAAAATGCTAAAGTTAGCAGATGGTGTCAGTGACGGCGTACACAAACCCAATGCATGGATTGAATTCTGCCTTTGTCCCCACAGGCTGCTTACAAGGTAACAAAacaaatatgtaattttgaaattAGGATGAACTAATCCTTTAAGACTGTGATTAGGGGAAAGAGATGAGGATGGGTCATGAAGCTGAGGGTGAAAGAAGGGAAGACGGTGGATGGAGGAAGttgagagaggaagatggaggtaAGAGAGTGCTGTTACCGTGATAGGAGCACTGGTGAGTGACCACCACTCTGCTGTGTCCAGCAGTGCTGTTACAGTTGTTCAGAGACATCTGTATGCTGACGCCGTTATAGTCATTCAgggtaagagttagggttagagtaaagaggagaggattGGTCATGAAGACGAGGGAGGAGGACTGAGGATGATGAATGGAGGAAGACaagcggggcggcaggtagcctagtggttaagagtgctGGGTAattaaccgaaaggtcactggttcaaatccctgagttgactagataaaaaataaatgagagCACATgacagagggatgtagagagtGCTGTACCTTGATAGGAGAGCTGGTGAGTGACCACCACTCTGCAGTGTCCAGCAGTGCTGTTACAATTGTTCAGAGACATCTGTATGCTGTCATAGACCTCAGAGCTGGTCACGTCAGCAGAGAGGGAGAACATGTTGACAGCAGAGATATGAACTCCGTCTT
>TU2061255
CAGTGGATTAGATGATTAGAGTTGTCACTGCTTACCTGACACAGGTTCCATTGACCCGTTTCAGACCATCACCGCATTCTGTAAGATGTCATTTTACAATAATTTCAAAGCaacaacatttttgttttataatacattttCTTTTCAAAAAGCTGCCTgctaaaatgaaaataaataaagtaaattTGACATAAGATATGTTTGACTGAGGCTGGGTCATATTCACAAGGCACCAAAACGAAGAAAACGCACTGAAACCCCGCCAGGGAATACGTGTTTTTTGTTTTgcattgcaaaacgttttgctatggTATGCTTTAACGTCTGCTTGCTCCACCCTTCCAGGCCTCACCTAGACAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTTACCCTCCACGTTATCCTTGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGACGGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGACAAGATGGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCAACTTATCCTCGTTTCAGGCCTCACCTAGACAAGATGGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGACAAGATGGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCTCCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAAGCAAGATGGAATACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGGAAGACTACCCTCCACCTTATCCTCATTTCAGGCCTCACCTAGGCAAGACAGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTTACCCTCCACCTTATCCTTGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTTGTTTCAGGCCTCACCTAGGCAAGATGGAAGACTACACTCCATCTTATCCTCGTTTCAGGCCTCACCTAGGCAAACTGTAGGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTCCACCTTATCCTTGTTTCAGGCCTCACCTAGGCAAGACGGAAGACTACCCTCCACCGTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAAGATGTAGGACTACCCTACACCTTATCCTCATTTCAGGCCTCACCTAGGCAAGACAGAAGACTACCCTCCACCTTATCCTCGTTTCAGGCCTCACCTAGGCAGGACTGGTCCTCAGGGTTGAGTTTGAAGTACCCTGGTTGACAATGGCAGTAGGCTGTCCCATTGGAGTCGACACAGAAGGAACGCTCTAGGTGACACTGGGTATTCTGGGCCAGACACAGACTCTCAACTGAGGGGCAGAGAGGGGTAGATTAGGATGGGAGAGGGGTAGATTAGGATGGCTGTAGCAGGGTCAGGTATTAAATGTAAAACATGCTAATGTCATACATTGACGTTCATCGTTTTTTGGGCTAGAAAATGCTAAAGTTAGCAGATGGTGTCAGTGACGGCGTACACAAACCCAATGCATGGATTGAATTCTGCCTTTGTCCCCACAGGCTGCTTACAAGGTAACAAAacaaatatgtaattttgaaattAGGATGAACTAATCCTTTAAGACTGTGATTAGGGGAAAGAGATGAGGATGGGTCATGAAGCTGAGGGTGAAAGAAGGGAAGACGGTGGATGGAGGAAGttgagagaggaagatggaggtaAGAGAGTGCTGTTACCGTGATAGGAGCACTGGTGAGTGACCACCACTCTGCTGTGTCCAGCAGTGCTGTTACAGTTGTTCAGAGACATCTGTATGCTGACGCCGTTATAGTCATTCAgggtaagagttagggttagagtaaagaggagaggattGGTCATGAAGACGAGGGAGGAGGACTGAGGATGATGAATGGAGGAAGACaagcggggcggcaggtagcctagtggttaagagtgctGGGTAattaaccgaaaggtcactggttcaaatccctgagttgactagataaaaaataaatgagagCACATgacagagggatgtagagagtGCTGTACCTTGATAGGAGAGCTGGTGAGTGACCACCACTCTGCAGTGTCCAGCAGTGCTGTTACAATTGTTCAGAGACATCTGTATGCTGTCATAGACCTCAGAGCTGGTCACGTCAGCAGAGAGGGAGAACATGTTGACAGCAGAGATATGAACTCCGTCTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106606065

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2061254 False 1319 lncRNA 0.49 1 32953796 32955114
TU2061255 True 2627 lncRNA 0.48 1 32953796 32956422

Neighbor

gene id symbol gene type direction distance location
LOC110501778 LOC106586454 coding downstream 71692 32855959 ~ 32882104 (-)
LOC118943602 NA coding downstream 774791 32178641 ~ 32179005 (-)
ube2e3 ub2e3 coding downstream 955445 31944574 ~ 31998351 (-)
itga4 itga4 coding downstream 1179784 31736087 ~ 31774012 (-)
itprid2 ssfa2 coding downstream 1335191 31572817 ~ 31618605 (-)
LOC110501785 LOC100194642 coding upstream 214820 33171242 ~ 33180375 (-)
LOC110502092 erbb4 coding upstream 445326 33401748 ~ 33509768 (-)
LOC118936582 erbb4 coding upstream 541242 33497664 ~ 33632178 (-)
LOC110501786 LOC106586446 coding upstream 730760 33687182 ~ 33927932 (-)
LOC110502093 LOC106582292 coding upstream 994631 33951053 ~ 33983502 (-)
G1801327 NA non-coding downstream 30534 32919863 ~ 32923262 (-)
G1801322 NA non-coding downstream 39903 32913333 ~ 32913893 (-)
G1801066 NA non-coding downstream 144273 32806574 ~ 32809523 (-)
G1801067 NA non-coding downstream 147682 32800789 ~ 32806114 (-)
G1801069 NA non-coding downstream 154154 32798605 ~ 32799642 (-)
G1801334 NA non-coding upstream 576 32956998 ~ 32957504 (-)
G1801331 NA non-coding upstream 1900 32958322 ~ 32960485 (-)
G1801479 LOC106582286 non-coding upstream 186244 33142666 ~ 33143768 (-)
G1801548 NA non-coding upstream 288148 33244570 ~ 33244783 (-)
G1801582 NA non-coding upstream 309735 33266157 ~ 33266381 (-)
G1801352 NA other downstream 126 32950467 ~ 32953670 (-)
G1801071 NA other downstream 176019 32759858 ~ 32777777 (-)
G1801195 NA other downstream 249473 32703800 ~ 32704323 (-)
LOC110501748 LOC106582253 other downstream 1911580 31037006 ~ 31042302 (-)
G1799132 LOC106582249 other downstream 1958494 30976894 ~ 30995302 (-)
bard1 bard1 other upstream 1562084 34473620 ~ 34544232 (-)
G1803964 NA other upstream 2170057 35126479 ~ 35126833 (-)
LOC110502094 LOC106582301 other upstream 2251041 35138330 ~ 35471205 (-)
G1805927 LOC106582360 other upstream 3101422 36057844 ~ 36059768 (-)

Expression


Co-expression Network