G1801479 (LOC106582286)


Basic Information

Item Value
gene id G1801479
gene name LOC106582286
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 33142666 ~ 33143768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2061410
ttattgatgAGATGAGAATGTTGATATTTGCAGCCACTTTGCAGATGCCTCCCTGGCCCAGCCAGCGggactgcattccaaatggcaccctatttcctatttagtgagctacttttgaccatgtcctacaggccctatagagaatagggtgccatttgggacgaaaccCAGGAGTGGTTGGTCACCTGTAGGTTTCCTCCTAGCACAGGGGTGGGGTTGGGGCTGGGCGGGACTTGGGTGTCGGACCGCAGTAGGCTTTAACACACTCTTCCGGGATGGAGAGGAGCGCGTCTCTGCTTTCTTAGTCAGCTCAGTCTTCTTGTTCACGGCTTTTTTTCTTCTTGATGTCTTCCCTGGGGATACAGACAGTCTCCTTGCGGACGGGTTTACGTTCAGGGGTGGAGACGCACCCCTCGCGCCCCCTCACACGCCCGCTTTTAGCCTTGGGCTTCACTGGCTGCTTTTCCTGCTTCTGCTGCTGGAGAGTCTTGTACTTCTTGACTGGTGGGGCTGGGACCCGGTCGGCTGTCAGGGGCTCGATCTGCTCGGCAGCCATGCTCATGTCATCATCCACATCGACAGTGGA

Function

NR:

description
microtubule-associated protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2061410 True 586 lncRNA 0.55 2 33142666 33143768

Neighbor

gene id symbol gene type direction distance location
LOC110501778 LOC106586454 coding downstream 260562 32855959 ~ 32882104 (-)
LOC118943602 NA coding downstream 963661 32178641 ~ 32179005 (-)
ube2e3 ub2e3 coding downstream 1144315 31944574 ~ 31998351 (-)
itga4 itga4 coding downstream 1368654 31736087 ~ 31774012 (-)
itprid2 ssfa2 coding downstream 1524061 31572817 ~ 31618605 (-)
LOC110501785 LOC100194642 coding upstream 27474 33171242 ~ 33180375 (-)
LOC110502092 erbb4 coding upstream 257980 33401748 ~ 33509768 (-)
LOC118936582 erbb4 coding upstream 353896 33497664 ~ 33632178 (-)
LOC110501786 LOC106586446 coding upstream 543414 33687182 ~ 33927932 (-)
LOC110502093 LOC106582292 coding upstream 807285 33951053 ~ 33983502 (-)
G1801331 NA non-coding downstream 182181 32958322 ~ 32960485 (-)
G1801334 NA non-coding downstream 185162 32956998 ~ 32957504 (-)
G1801333 NA non-coding downstream 186244 32953796 ~ 32956422 (-)
G1801327 NA non-coding downstream 219404 32919863 ~ 32923262 (-)
G1801322 NA non-coding downstream 228773 32913333 ~ 32913893 (-)
G1801548 NA non-coding upstream 100802 33244570 ~ 33244783 (-)
G1801582 NA non-coding upstream 122389 33266157 ~ 33266381 (-)
G1801586 NA non-coding upstream 124178 33267946 ~ 33268155 (-)
G1801595 NA non-coding upstream 134599 33278367 ~ 33278699 (-)
G1801599 NA non-coding upstream 138567 33282335 ~ 33282592 (-)
G1801352 NA other downstream 188996 32950467 ~ 32953670 (-)
G1801071 NA other downstream 364889 32759858 ~ 32777777 (-)
G1801195 NA other downstream 438343 32703800 ~ 32704323 (-)
LOC110501748 LOC106582253 other downstream 2100450 31037006 ~ 31042302 (-)
bard1 bard1 other upstream 1374738 34473620 ~ 34544232 (-)
G1803964 NA other upstream 1982711 35126479 ~ 35126833 (-)
LOC110502094 LOC106582301 other upstream 2063695 35138330 ~ 35471205 (-)
G1805927 LOC106582360 other upstream 2914076 36057844 ~ 36059768 (-)
LOC110501806 sema5b other upstream 3433980 36552698 ~ 36837583 (-)

Expression


Co-expression Network