XLOC_003721 (zgc:153431)


Basic Information

Item Value
gene id XLOC_003721
gene name zgc:153431
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43751263 ~ 43787153 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007197
ATATTCGTGCGGCGTTCCGTCCTCGTCCTTCTCCGTCCGCGATTTttccaccaaaaaaaaacaaccaacacAACCCGCACCCgtgtcaaaaaataaacaaataactaacaAACCTGAAGAGAAGTGCAGCCTCAGACGAGACGCGCGCGTTTTTATTCTGATGAGGATATTATTGAGCTCGCTTGTGTCGCGGTGGATTTGGAAACGGATTTATCCTATTTAGGATCGTGTCACTGGAGCAAAGGAATACAACAGAGACAGCAAATCCCTTCGGATTGACAGATTCTTCATCATGATCTTGCAGTGATTGTGGTGAAACTGATCTGATCGTGACGATGGGGATTTTCGGGAACCTGGCCTGTTCGGGTCAGCCCCACTGCCAAAACAACAGCACTTCCAAAGACTACTGTTACTCGGCCCGTATCCGCAGTACTGTCCTGCAGGGGCTGCCCTTCGGAGGGGTTCCCACCGTCCTCGCGCTTGACTTCATGTGCTTCCTGGTTCTTCTTTTTGTCTTCTCCATCTTGCGGAAAGTGGCGTGGGATTACGGCCGTCTGGCTTTAGTGACCGATGCTGACAGGTAAGGACATGTCAATTTTTTTAGACTAGGTTTGGTTGATGGTTGTGATTTTGATGTTGAAGAGAATAGTTTCTTCGCTCTTAGATAAGGAATCGCAAACTGTAAATGCCGTGTACTTCCTTCAATTCCTCTATATATTCTCTGGAGATGATGTATATGTGTGGTGTAAAGGAACATGCATGTGGGAGTATTTCTTTGAAAAAAGTAGGTCAAAGAGAGCAGAAAGAGAAGAACATTTATGATTTGCATTAAGTGAATGCCAATCTTGTAAATCGGCAGGTTTCTGGCAGATATGAATAAAGAGATGAGGCAGACAGAGTGCCATTTACAGCTGTTTTTATACATGCATTTTCACAAGGTCTTTATAGAAGGAGTCTGTGggtatatacagatgaagtcagaattatttgctccctgtttattttttttccccaacttctgtttaagggagagcagatttttttcaaaacatttttaaacatattaattttaataactcatctctaataactgatttattttatctttgtcttgatgacagtgaataatagtAGCCTAgatatcaagacacttctatacagcttaaagtgacatttcaaggcttaactaggttaattagggtaattaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactgtcg

Function

symbol description
zgc:153431 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-281 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000103608

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007197 True 1267 mRNA 0.41 3 43751263 43787153

Neighbor

gene id symbol gene type direction distance location
XLOC_003720 ralbb coding upstream 7561 43740949 ~ 43743702 (+)
XLOC_003719 gli2b coding upstream 37513 43661735 ~ 43713750 (+)
XLOC_003718 CABZ01073015.1 coding upstream 104589 43643158 ~ 43646674 (+)
XLOC_003717 NA coding upstream 215373 43532582 ~ 43535890 (+)
XLOC_003716 slc29a1b coding upstream 292651 43419809 ~ 43458612 (+)
XLOC_003722 NA coding downstream 24476 43811629 ~ 43817356 (+)
XLOC_003723 NA coding downstream 34402 43821555 ~ 43822853 (+)
XLOC_003724 NA coding downstream 156729 43943882 ~ 43950660 (+)
XLOC_003725 FP016005.2 coding downstream 237609 44024762 ~ 44024878 (+)
XLOC_003726 FO704721.1 coding downstream 348198 44135351 ~ 44138271 (+)
XLOC_003369 CR854846.2 misc upstream 27628181 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31039267 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31057000 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31065664 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31071235 12679732 ~ 12680028 (+)
XLOC_003712 CABZ01058277.1 non-coding upstream 453630 43295275 ~ 43297633 (+)
XLOC_003710 CABZ01080006.1 non-coding upstream 673922 43070883 ~ 43077341 (+)
XLOC_003709 CABZ01092982.1 non-coding upstream 706314 43044826 ~ 43044949 (+)
XLOC_003727 NA non-coding downstream 376177 44163330 ~ 44196871 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location