G1803393


Basic Information

Item Value
gene id G1803393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34639972 ~ 34657362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2063442
CCTCGATTTGTTTTagcccatatcgtgcagcccatgtggcagtgtggaaatgatctcaaatgagtgtAGGAAATGCAGAAATGGATAAAAATGCAGAATGTTTTTTTTGGTTGAAGTTTAtttaaacagtataaaacaaatcaaaacagagagcgacccattgaaatcacttagaatgtatgtggTGCCACCCTAGGGTTACACACTACAAAGCCAAATGTAGAACTTGCATTATTCCAAAAACGTAAAATACAATGACATGATATTTTGTCCAGCCCTTAAAATCAGAATCATTGTAATCATTTAGACAGTAGGATCAAACCATGCATTGATGAATTAACTAATGGCTTCTTATCATTCATATAAATCACAACTACAGGCCTACATCAGGATTATGTGCCTAGTGCAAACCATTGGAACACTTAGATACTCTTTTTCTTTCACTCTTGATCCTTTCAGGTTTGCATGAAaatggtgtgtgcatgtgttattTAATTTCAATGTAAATACCCAGTATCCTTTTGGGTCACAGTGTAAAGGACCACTTGGCTGAGCAGAGCTTCATGTGTGGGGATCTTGTTAAGCCAAGTAaatgtttctttcatttaatcTTGTTGTTTTACTGCATGGTCGACTTTTGAAAGAACAGGTTGGTGTAGTAAAATAAAGTGCTTTCTAGAGGAGCGGCTCATTCCCCTTGAATCTAACCAGCCAATAACTCTACCACATTGTCCACAAGTTGTAGTAATACATACTGCCTTTCCTGTCGAGCTGATTCAACTCCCCAGTTAGTCATAGCCCACTGTTGTCTTTTGTGACTTGTAGATCTGATAATGGTAATCGAGGGAAATGGCTGAAGATTAAAATCAACACCATCCCAAATACTGGCCTAGGTACTCCTGAGCCCGCACTCATAaggcatctcagagtaggagtgctgatctaggatcaggttcccctGTTCATATGTTATTGTGATCCAAAGGCAACACTGATCCAAGATCAACACTCCTACTCGGAGGTGGCTTAAGAATGCAGGCCCAGTCCAGCACTAAATATTATGTGCCATCCAGTATCAACAGCAATAGTCCATCTAGAGCCCTCAAACTTAACTTTGGACCTCGaaaccagttccactgcatttttttcattgttaccctgtaatcagggactgatttagacctgggacaccaggtggatgcAATTCAtcatcaggtagaacagaaaaccaccaggctccggacctcgtaggacagttgaatacccctggtctaGAGTATGTTTCTATTACATAAACTGCCtttacaaagtattcataccccttgatttgttccacattttgttgtgttacggcAGCGTTTCTCAAACTCGGGTCCCAAGTGCCGAGTTTAGGAAACCCTGTGATACAatttgaattcaaaatgtattaaatagattcccctcccccctcacacatttacacgcaataccccataatgacaaggtgaaaacatgtttagacattcttgcaaatgtattgaaaattaaatacagaaatcaaATTTACATTAGTCACACCCCTTTGCCATGACACTCCAAATTAAGcgcaggtgcatccaatttcctttgatcaacCTTGAGACATCACTACAACTTGGGAGTCCACCTggggccaattcaattgtttggataTGTTTTAAAAAGAAACACCGGCCTATATAATgttcacacagttgacagtgcatatcagagcagaaacaatcatgaagtcgaaggaactgtccgtagctCTCCGAGatatatatctggggaagggtataaaacaatttctagagtgtTCTAGAGCTGGCCAGCCAACCAAAAGGAGCAATCGGACAAGAAggactttggtcagggaggtgaccatgaacccaATGACTAATCTGACAGaagtacagagttccttggctaaAATGGGataacctgccagaaggacaactatctctacagcacttcaccaatctgggctttaccGGACagtgaccagatggaagccactcctgagcaAAATTACTTTACGATCaagacacgcaggttgaaatatcaaaacggaCTCTGAAAAAACAATAttaaatttggggacaggtcgaaaagcattatatgtttagcaagctagcttgctgttgctagctaatttgtattAGCTagcatatgtaacagtataactttagaccatcccctcgcccatacccgggcgcgaaccagggaccctctgcacacatcaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgagaGCAAGGGGAATATTATGTGCCATTCCTCATCCAGTAtgagagcaaggggaaccactacttcaaggtctcagagcaagtgacgtcaccgaagCTAACTTGTGTATTATCAATACCTTAAAAATCATTCAGGGTGGGTGGCAAGTGTCATACAGAATCTGAAAAACAGATGTATATAGTGACCGACTTTTCCAGCTATTTTCAACCCTGACTATGGCATTTCTTCCGTATTCAGTCATTGTGAAATGGAGTGACCGACAGGTTTGACGTGTGGCAGTGGTCTGGACTCGGTGGTCTCATGTTACACAAAGCAGGTGGttagtcaacaaaacaaagacgGAATGACCGGTCCAGATGGTCTGACAGGGACAGGAGGATTAAGATCAATGTATGAAGCGTTTGGTTTGGCCCATGACAGACAGCCACTTCTGGACCATTCAGAGAAACCGCCCCAATAAAGGGATTAatcacagcggttgcattaaggagaagtatatctttaattctgtgaataacagttgtatcttttatcaatgtttataatgagtatttctgtaaaatcaccaaatgttttggaatcaaaacattactgcacataacgtgccaatgtaaactgagattttttgatataaatatgcacattatcgaacaaaacatacatgtattgtgtaacatgatgtcctatgagtgtcatctgatgaggatcaaaggttagtgattaattttatctatatttctgctttttgtgactcctttctttggctggaaaaatgtctgtgtttttttgacttggctatgacctaacatgtatgttgtgctttcgctgtaaagcatttttgaaatcagacacaatAGGTAGATAAACAAGATGttcatctttcatttgctgtattggact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2063442 True 3185 lncRNA 0.41 3 34639972 34657362

Neighbor

gene id symbol gene type direction distance location
LOC110501791 LOC106582296 coding downstream 47284 34585700 ~ 34592688 (-)
bard1 bard1 coding downstream 95740 34473620 ~ 34544232 (-)
LOC110502093 LOC106582292 coding downstream 656470 33951053 ~ 33983502 (-)
LOC110501786 LOC106586446 coding downstream 712040 33687182 ~ 33927932 (-)
LOC118936582 erbb4 coding downstream 1007794 33497664 ~ 33632178 (-)
LOC110502094 LOC106582301 coding upstream 480968 35138330 ~ 35471205 (-)
LOC110501794 ralb coding upstream 1040224 35697586 ~ 35738804 (-)
tfcp2l1 tf2l1 coding upstream 1435826 36093188 ~ 36102895 (-)
LOC110502096 LOC106582358 coding upstream 1448685 36106047 ~ 36228129 (-)
nifk mk67i coding upstream 1570999 36228361 ~ 36232090 (-)
G1803329 NA non-coding downstream 55942 34583565 ~ 34584030 (-)
G1803350 NA non-coding downstream 70098 34569622 ~ 34569874 (-)
G1803089 NA non-coding downstream 184945 34454807 ~ 34455027 (-)
G1803079 NA non-coding downstream 193305 34446334 ~ 34446667 (-)
G1803052 NA non-coding downstream 217290 34422467 ~ 34422682 (-)
G1803399 NA non-coding upstream 12477 34669839 ~ 34671292 (-)
G1803400 NA non-coding upstream 14007 34671369 ~ 34672336 (-)
G1803441 LOC106582299 non-coding upstream 102553 34759915 ~ 34768728 (-)
G1803492 LOC106586437 non-coding upstream 131190 34788552 ~ 34790496 (-)
G1803522 NA non-coding upstream 166351 34823713 ~ 34824011 (-)
G1801331 NA other downstream 1679487 32958322 ~ 32960485 (-)
G1801352 NA other downstream 1686302 32950467 ~ 32953670 (-)
G1801071 NA other downstream 1862195 32759858 ~ 32777777 (-)
G1801195 NA other downstream 1935649 32703800 ~ 32704323 (-)
G1803964 NA other upstream 469117 35126479 ~ 35126833 (-)
G1805927 LOC106582360 other upstream 1400482 36057844 ~ 36059768 (-)
LOC110501806 sema5b other upstream 1920386 36552698 ~ 36837583 (-)
G1806393 NA other upstream 2278296 36935658 ~ 36936087 (-)

Expression


Co-expression Network