G1805029



Basic Information


Item Value
gene id G1805029
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36106094 ~ 36108964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2065171
GGCAAATCATTTATCACAGGTGGATGTTAACGAAACCCTTCTGTACAAGTTGTCATGAAAAACTACAACTAAAATAAAACTATCATACATACAGATATGAATCTTAAATGACAAAACAATAGAAACAATAACATGCAAAGGGTACAGATTGCTAGGATTAGCTTCTCTTAGGGACCATCATCACCAGCAGATAATGATCCAGATCTTCAGCCAGATCAGCCAATACAGTACTTTCTGTCTTTAACAAAACAATTGGCTTCTCCCTAACACACAATCAAATAAAATGAACATACTTACAAAAGGATGATGGCCCcatttaaaaacaaacaaagcAAACAATTAGTGTCATTTTTTTAAACTGTTCAACAGATGGAAATAGATGCCACACACTTTACTATGGTAACaaggcacgcacacacagtgtACCTTTATAAAGCCACATGCCCAAATATGTAGTACTGTACTAAAGGAGACCCAGTACTGTATATGTCTGCTTGGCATCTTGAGACGGTTAGGTCCTGTACAGTGTACACAGTTGTCGAGGGCAGACAGAGTCTTCGTAGTTCTGGACAACTCACAGAGCTCTGTGAGTGTATTCCTGCCAGGTGGCTGGCTGTTGTTGTAAAGGCTGACCAAACTGATGCGGTTACAAGTGCACTTCAACAGCGAAAACAGGACCCATCGATTAAAGGCAGCACCAAGTGGATGTGCTGCCCAAAAACATGCAAGCTAATTCGCTAGCGTGCAAAAAAAGTGAGAGAGCCAACCTTTTTATTTCATTACACGAAAGTTGCGAAGTGGTGATTGATCAAGAGTTATGTACAAAATACTTAAATTTGCTCATCATGGTATTTTCTTTATTGCAAAAGCTGTAGTTGCGTGAAAGGAAGGTGATGAGAAGATGGGTGTAATACTGTATTATTATAAACAACTAACATTTGCATCATCGTGGTGAATATTATTGTATCGGTTTGCAAGCCAGTTTATTGTAGTTCCTGGAGTAATGGATTCACATTTTTAAGAGCTGAGAGCTTCTGTATGTACATCTATCCTATTTTTCAACAGTAGAAGTGATCCAAACATTACTGTGGAAAATTAACATAAACCTAGTTGGGACGGTTACCTGGACGCATATTAAGACTAGGACTAAAACATACTTTTAATAGATATTCTCCATTGAGAATAGTTTTTAATCCAGGACTAGTAGTCTGTCTCAATGAATCCACTGATCTCCTTCCAAAACTGAGCCTGTAATATTTGCATTATCAATAAGTGTAGGGTTGTTACTCATCAGACAGGTATACGTTATAAACAGCAGCATCAATGCCATAATCTGGCAACATAGCTGGgaataaataaatgtgacactttggatttgtttagtgttttcactGACAAGTTTGTATGTTGTCATGACTTATAATGGCCCACTCATTCATGGACATTGAGTAGGTTGTGAAcactcattctaattctatgagTTGGAAGTGATCCATTCAATTTCACTTGATTGATTCAGGGAATGTAAAGAAATGTAATGGTGTATTTTCTTCCCttaatatttgtttttatttgacaATCGAAATGGAGTTAACCACAACGATAATTGAATGTGAGTTGGAAAGACAGATTGTCTAACTTCAGACACTGTTGCATCTTTACCGCTCTCCTTATTTTGAACAGCTTCAATTTTAGATTGCCAATTTCTGGTTGAAAAAATGAAGGTCAAATGAAGGTCATTTATGTAATACAATACTTCTATTTTCTTTTCATGATATAGCCAAGCTATTAGCTGGAAGTTGGCCTCTGATAATGTTTAATTATAATTTCTCCCAAACTAATGGATACTAACAATAAAACATAGTGTTAGCTTACCTGGGCTTAAGTTAGTCTTTATAATGATTGACATACGtaacatttttttaataaaatgtttCCTTCTTTCACTTTTTATAGGATTGTATAACGTCATACCTCAGTTAATAAAGAAAAACAATCTACTAATTCTACTTCATTCGCTGACATATTTGGTTTTCCTTGTTCCTAAACTGTTTATAAGGGCTTTGTATCCTCACTGGGCCAGCCATATGATTCTTTATCACAAACCGACTGTCATGTGGTCCCCCTTGACAGGTCTTCCgacctcaatgggacttcctggttaAACGTGAAGGGCCTATTCTACTGTGACGTTTCAGGCTGTGTTTACTCATCCAATTGCATTTGAAGGGATGTTTTGTTTTTGCTGAATCAATATCAGGGTATTATTTAGTATTGGACCATAAGTACCATTCTTATTGGCACATATCATAACccttggttatgtttccacccctaCACACTGAATGCTCAACAAAATGAATATCTGATCTTTACCTTACAACACATTGCTAGTGATGCGTCATaacagctgggggggggggacaacgaCGGGACGAGACAAATGAAGGTACAAGTTCCATGGGGGGAAAAAAGAGCAAAGTAAGTGAAGTGGTGGTTGGAGCGATGAGCAGGTCATAGGGTCACCAGAGGAGTCCAGTGGGGtgaaggagagaagaaaagatCAGGAATGGAGAGGTCTGGAAGAGGCACGACTATaaatctgtcccaaatggcaccctattccctatatagtgcactacttctggccagagcacaacagtagtgcactatatagggaaaaggatgccatttgggaagcaacctTTTCCCCCTAATTCATATGCACAGTACAGGCAGACGGATCTGTGtttccctccctctgctcctACAGCTAGCTGTGTGAAGAGACATCCGAGGaactgctgctgttgctgttggtTGTCTGAGCCCTCTTGATGTACAAGTTCAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2065171 True 2851 lncRNA 0.39 2 36106094 36108964

Neighbor


gene id symbol gene type direction distance location
LOC110502095 LOC106582360 coding upstream 45957 35943510 ~ 36060137 (+)
LOC110501798 NA coding upstream 291182 35783183 ~ 35814912 (+)
LOC110501797 LOC106582303 coding upstream 325550 35769181 ~ 35780544 (+)
LOC110501795 LOC106596205 coding upstream 345575 35740427 ~ 35760519 (+)
LOC118943586 NA coding upstream 1056636 35047732 ~ 35049458 (+)
LOC110501801 tsn coding downstream 134191 36243155 ~ 36247834 (+)
LOC118943606 NA coding downstream 230790 36339754 ~ 36345450 (+)
LOC110501802 LOC106582356 coding downstream 244706 36353670 ~ 36359762 (+)
LOC110502098 LOC106586421 coding downstream 253138 36362102 ~ 36376836 (+)
LOC110501803 LOC106582352 coding downstream 270542 36379506 ~ 36406219 (+)
G1805026 NA non-coding upstream 3217 36093195 ~ 36102877 (+)
G1805024 NA non-coding upstream 14461 36091393 ~ 36091633 (+)
G1805010 NA non-coding upstream 38371 36067494 ~ 36067723 (+)
G1805002 NA non-coding upstream 60493 36045373 ~ 36045601 (+)
G1805042 LOC106582358 non-coding downstream 18741 36127705 ~ 36128553 (+)
G1805044 NA non-coding downstream 22648 36131612 ~ 36132062 (+)
G1805056 NA non-coding downstream 38056 36147020 ~ 36147594 (+)
G1805107 NA non-coding downstream 109837 36218801 ~ 36219368 (+)
G1805068 NA non-coding downstream 120784 36229748 ~ 36232077 (+)
G1804873 NA other upstream 230642 35874562 ~ 35875452 (+)
G1800754 NA other upstream 3191912 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 3731913 32317123 ~ 32374208 (+)
G1798597 NA other upstream 4808675 31293552 ~ 31297419 (+)
G1805191 NA other downstream 254632 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 326036 36435000 ~ 36520762 (+)
LOC110501842 LOC106586352 other downstream 1970902 38079807 ~ 38213191 (+)
G1807306 NA other downstream 2190163 38282124 ~ 38316253 (+)
G1807376 NA other downstream 2297173 38406137 ~ 38411163 (+)

Expression



Co-expression Network