G1805123 (LOC106582309)


Basic Information

Item Value
gene id G1805123
gene name LOC106582309
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36248134 ~ 36251244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2065273
GTCTAAAATGCAGAGGAAAAACATTTGACAGTCCAGCAGGTCTCGgatattttcaaaatgtttacacaGCATCGGTCTTCCCATATACGGTAGTAATCATTTAGTGGAACAATATGGAAGCTGAAAGAATTCAAACAATACAAATAGAATGAGATTCTTGAAATAGAATGAGATTCTAATTCTATGATTGTAACAGTGCTAGCGCCATTGGAAGGTGATGAACAGTAAGAGACAGGCAGTAGTCCACTCCGTACATCATTCTCTGTCCAAAAACAGTGATTCACTACCTCCCTTAACCTATGCTACTCCTGGACTAAACACAATCAGACTAAACAGTATATGGAGGTTAGATTTGTTTGATAAGAAGTATTGCCTTGACCTGCTGTATGTAGTCAGCTGGGGTCCTATATGTTTCCCTAACATAAAGAGTTCTGTGAATAAACAACACAACCGACAGAATAAATCTTTTGAAATCATGATTGGCAGATAGTGTTGTTGAAGAGTGACAGTCACACCATAATATGGATCTACTTTGTAGTCTTAattatatagtgccttcagatTCAGAAAcatcagacacaaaaacagattTTAGGAGAAGGGAAGTCACACTTGAGATAAGGGCACAGGTAATCTATGACATAATGTAGGAACACTAGCAGCCGATGGATGGATTAGAACTGCCTGTAAATTCTGGCATCCAAAAAGATTTCACTAAATTTCAGATTGGTGAATGTAGTGTTCACACTGGTATAACCAGGCTATGTAAAAGCAGGCTTTTTAAGTGTCTTTCTGCTGCTACCTCGGGGCAGAGGGCGGTCTGACTTGATGACCATTTCCAGATACTCATAGTTTTATCAACATTACTGTGACTGGCAACAGAAGAAATGCTTTTGTTAATTTAGAGTGAAATAAAAACCCAAGGAACAAAAGCTCACAATTTCCCCATCTGATTGTCATGGAACAGCACACTGTGAAGACATTTGACTGGCGCTACTGTGAAGACATTTGACTGGCGCTACTGTGAAGACATTTGACTGGCGCTACTATGTCAGCTTTAGCTACTAAACTCATGGTCCAGGTTGATCTGTGTTTGAGGCCTTTCCACCTCCACTTTGGCCATGCTGTACTACCACATTCAGGTACAGGTAAAGGCTTTGAGAGTTTGAATAAACAGTTGACAATACTGGTAGGGGCCAAACCAGGCCTAGGCTTGAAGTTCAAGAGCACGTTATTCTGTGTCAATAACATCACTTCCAGTCATAGGTGGGATAATAAGCTCTCGATTTCCCATAATTACGAAGTCTGACCAGATGTGGAGAAACTAAAATAAATAGCTAAAATTGCACAATTTATTGCTTCTTTGTGACTTGAGCCCACCCAGCACAGTGATacaaatcagtggaggctggtggggagcactataggaggacaggctcattgtaatggctagaatacatggaatggtatcgaacacatcaaacatggaaaccacgtttgactccgttccattcatTTCATTTAAGTGCTTACAATGAGCCcgttctcctatagctcctcccaccagcctcctctgatacaaGTATGTCCACAACCCTGGGTTCAAACTGTCTGACAGACACTGTCTGCACAGCATCCATAGTAGGAAGTCACTGACGGACTTCCTACTATGGATGCCATTTCTCGGATCTCTGCTGGCAGTGGACATTGCTTCTGACACAGAGGGCAAAAGAAAGGGGGAAGAGGCCAGTGATTTTGACTTACCTTAGTCAGGTAAAATAAAAGTTCCTGTCTTTTTCTACTAAGCTGTAATCCAAGTCCCCATTGTATAATTTAACAGTAGTTTTTCACTAATTTGTGCATTTTCATTAGCATTACAAAGTCATGTTTTTTCAATCATCAACTTCAACCATGCTTTTCAACAcagacaccagtcagtcagtatacTGAAAACATCTCTTTCTTCAAGAGCAAACAGTTTTGACAACCAAGGCCAGCAGTGTTCCCAACCAAGTCTCCTTTTTTGGTCATCCAAGTGGCTGATCATTTTTAGGCAGAAGCTAAAAACTATGCCTTCATACGTTTCGTTACAGTATGGTGCACTTGCAGTTTTTCTTAGAAAAAAGTGCTATCCTCATCATAACATGGAACCTCACAAATCCCACCCTAAAACCTCAGaaacaaatcgctccaccatccAGAAGCATGGTCAATTCTTTTTGCAGTAGTAGTACATCTATTTACACTGGTATCCAGCCAGGGAAACGGTGTCCCTCAGTCTCAGGACCTGCCCTGGTTTGTGTTCATCATAATATTGGGGAGTGCGTTACGCCTCTTCCTCCACAGCCCCAGGTCACGGGTATACCTCTTGATTTGCCGGAACCACTGCTGCGTCCGGGGTTTATCTGAGGCCCTAAAAACAAAGGCCTCCTTACGTATGTCCAGCACCTCAAAGGTGTCCTCGCAGTCAGGGTCGCCCGACACCACACAGTTGGCCAGGTGGATGGGTTCTCTGAGCACGGTGAACTTCCCACTGCTCTTGTCTTTGATGAGCACCAGCACACCGTCCCACACGCCGTGCTCCTGCTGCTCCACCTTGGCCTCGCCGTCCGTCTGAGACAGACCCTCTCCAGGCCGCTGCGTACGCACCATCAACAGACTCTGAATGTTCTGGAACTTGAGGCCTTTACTGCCCTTCTTCACCCACTGTCCGTCTGCAGGCTGGGAGAGCTGCAGGGGCCCCTCCATGACGAAGCGTGTGTTCTCCCTGGCCCAGCCCACGGTCTTCATGGACATCTCCCGCATCTCGATGTTAATGACCTCGCGGTTCTTGCGACTGTCGCGGCGAAAGGAACGCAGAGTCCAGGTCAGGGTTCCTTCCTGCTTGGTCTTCATGTTGATGTGCTCCAGGTGAGACTCCACGCGGCTCTTGGCCTCTCGGAGACGGCCATGGTCGGGGTGGCAGTCCATGGTGACCTTGCTGATGCGGCTCAGGAGGAGGGGATACTTGGTGACCCTCTGAAGGGGAGCCATGAGGAAAGAGCGCAGGTTCATACGCCGCAGGGCTGTGTTGTCATTCTGGGACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2065273 True 3086 lncRNA 0.46 2 36248134 36251244

Neighbor

gene id symbol gene type direction distance location
LOC110501801 tsn coding upstream 300 36243155 ~ 36247834 (+)
LOC110502095 LOC106582360 coding upstream 187997 35943510 ~ 36060137 (+)
LOC110501798 NA coding upstream 433222 35783183 ~ 35814912 (+)
LOC110501797 LOC106582303 coding upstream 467590 35769181 ~ 35780544 (+)
LOC110501795 LOC106596205 coding upstream 487615 35740427 ~ 35760519 (+)
LOC118943606 NA coding downstream 88510 36339754 ~ 36345450 (+)
LOC110501802 LOC106582356 coding downstream 102426 36353670 ~ 36359762 (+)
LOC110502098 LOC106586421 coding downstream 110858 36362102 ~ 36376836 (+)
LOC110501803 LOC106582352 coding downstream 128262 36379506 ~ 36406219 (+)
LOC110501805 dirc2 coding downstream 183775 36435000 ~ 36520762 (+)
G1805068 NA non-coding upstream 16057 36229748 ~ 36232077 (+)
G1805107 NA non-coding upstream 28766 36218801 ~ 36219368 (+)
G1805056 NA non-coding upstream 100540 36147020 ~ 36147594 (+)
G1805044 NA non-coding upstream 116072 36131612 ~ 36132062 (+)
G1805042 LOC106582358 non-coding upstream 119581 36127705 ~ 36128553 (+)
G1805149 NA non-coding downstream 50606 36301850 ~ 36302207 (+)
G1805152 NA non-coding downstream 56306 36307550 ~ 36308377 (+)
G1805158 NA non-coding downstream 61961 36313205 ~ 36338220 (+)
G1805198 NA non-coding downstream 124342 36375586 ~ 36375795 (+)
G1804873 NA other upstream 372682 35874562 ~ 35875452 (+)
G1800754 NA other upstream 3333952 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 3873953 32317123 ~ 32374208 (+)
G1798597 NA other upstream 4950715 31293552 ~ 31297419 (+)
G1805191 NA other downstream 112352 36363596 ~ 36363930 (+)
LOC110501842 LOC106586352 other downstream 1828622 38079807 ~ 38213191 (+)
G1807306 NA other downstream 2047883 38282124 ~ 38316253 (+)
G1807376 NA other downstream 2154893 38406137 ~ 38411163 (+)

Expression


Co-expression Network