G1809159


Basic Information

Item Value
gene id G1809159
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40080106 ~ 40083967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2069895
AAAACTTTATTGTCCAATAAAACTTTTCCTCTGTGAGGAAGAGGTACCACATAGTCAGATATGTGTTCTACataaatatacatacagtagtgttTACATAATCTGTCATACCATTGAAATATTTACAATCAGACACATGATTCTACTCTTAAACTGTTCACAGGTGTAATTTACATGAAGATGATGTGCCTAGACgagtgtgaatgtgtatgtgtgcgttttAGAAAAAGCAAAAAAGTATATACTGTAGAACGCTGGGGTTTGTGTCAGCCTATGCAAAGGTAAACAGTGGAAAGGGCTAGTGTTGCTATAACATAACTTCATCGAATGATCAGTAGAAGACATCGCTATGGTTACACGTTTTGTCTATGAGATTGTGCTTGTGTCTGCTTCCTTACATTACCAGTGTGTTTCCATGTAtccctgtgtctgtctttgtctgatTACCAGTGTGTTTCCATGTAtccctgtgtctgtctttgtctgatTACCAGTGTGTTTCCATGTAtccctgtgtctgtctttgtctgatTGCCAGTGCTTGTGAAGTAAAACGAATGAGCCAATTAATTAATAGCACATTGCCGCCAATTACACCATTAAACACATATCTAGAAATAATTTGACAGCTTTGAATCGGGAATTACTGTAACAGATTCTTAGCACGAATTCAACTTCACGAGACGTCATCTGGCGACATTTGAGAAAACACATCCATACAGTGAAGTAATTACAAAATAGATGTTGCTCCTATTATGTCAGTCAATCTACAGCATCTACAGTATACTCACTTACAATGTACAGTATGCACAACTCAGTTGTATGACACTGGGATTAATACACAGGCATGAGAGCATACATACAAATTCCATGGAAAATTACAATCTTTTTTAACAGCCTCTAAATTCAGCTGATGAGGAAGTTTGTCCGTGTTATTGTGAATGTTACTGTATCCTGGCCTTCTAAGCAGTGAGCACAGACATCCTTTAACAATGTAAGACCAGGAATGATACTCTAAGAAGTATAACATTTCTTTAACTTCCTATTTCTGTGCTTCTTTGGATGGAATTTATGATCTAAACTCTGTGCTTTTTATTTTTCGAAAGACTTTGTGGGGGTAAAGAAAGCTCTCACTTACACGTTTACAGTGTATCAACTCAAAGCTGAGCTGAACTGGCAGTGTAAAGACTTATACTACGACTTAAATATAACGTGAATAATCTATTGTTTAGAAAATAACATTCATCCGTTTGAGCTATTCCTATTGGCTGGCTACATCTAGAAGCCTCTATCTAAACAGTGTATTAAACACATTTAATGTTTTGTATTTACAGTCATGTGCGTACGGTATACAGGAAACGCATCACTACTATGAGGGGTAAGCGGAGGAAAACAGTAAGAGAAAGAACACTGCTGTTGATGTGATCCAATATGCTGTGAAGCAGATCACTGATGTACATAGTGACCGATGGCAGCACATAATATTGACTCTCCATGTTGGTTACTGTCCATACTGTCAGGACAGGCAGATTAAGTTGGGacatgtacatttattttttaacatgTAACTCGAATGTATCCTCATATAACTATTGCAATTGTGAAACATGGCACATTATCACATCTATTGGCTACCGCATGTTAAGAATTATAATTTAGTTTAAAAAGTCATGAATACAATTTTGCAATATAGTGCTCTGTACATACATACCTATACTACTTTACCTGAACCAGTTACTTTCTCGTCTCTAACCTTGACGTCAGTCTTTCTCTCACGCTCTACCgacatagatacagtatatatcattGTAAACATAAGTGCCATGTAAACAAGCTGGCTAATAATGTTGTCTTCGTTTAGGAATCTGAGCATGTATGGCACTGAAACATATGACTATCAGTTATATAGACACGGTTATCCCAGACAAGGTTGTGGAGGGATACAGTCATTATTATGACAGGATTTAACACTGTTATCTAGAACAAAACAGTGTGGTACAGCATGCATATCTGGAGGAAGAGGTATTACTGTAGCTACTGTAACTGTCTCTAGTCTGGTTCCCTGTGTGCTCCCATCTGGATAGGCTTCTACTTGTGCTTTGTCAAGTAGAACGGTGTTTCTGTACTTCTAGTGATTGATAGACTTGTGTTCTTTGTTCTCAGCTTTTCAGTGGGACACTGTAATGCCATATTTTCACTTATGCTAACAGTTTGCTTTTCGCACTCAACCCTGAAGTCAATGTTGACTGTGAACTACTCTCTGCCTTGCTtgacggtctggtctggtctagtctagtctggtctgctctggtctgttttggtctggtttggtctggtctgctctggtctgttctgtgcatgtacagtactctatatctTACCAATGGGCAGCCACACCCCTCCAGATACTGGCCTGGCCCTGCTGTTTgggcctccctttctctcttttttttgtttCTCTCTGAAGCCAGAGAGTGGAGGACTACCGTGGAGTGACTGGCCATAGTCCTCTACCACCATGCATCACTGTGTCCTCTACTGGCACCTGGGCTGTGTCAGTAGAGAAGCCAGGAGAAGCCAGGAGAAGCACTGCAGAGGGCACATTCATTTACAGTATATGACTCCAGCTGTGTGAGCTGCTCACAGACCTACCTACCGTACACTGTATAGCTCTCTTTATatatactgaactaaaatataaaagcaacatgtgaagtgatggtcccatgtttcatgagctgaaataaatgatcccagaaatgttccatatgcacaaaaagcttatttctctcatattttgtgcacacatttgtttacatccctgttagtgagcatttttcctttgccaagataatccatccacctcacaggtgtagcatatcaagaagctgattaaagagcgtgatcattacacaggtacacaggtgctggggacaataaaaggccactctaaaatgtgcagttttgtcacacaacacaatgtcacagatgtctcattTTGCgggagcgtgtaattggcatgctgaccgcAGGAATGTTTACCAGAGCTGtttttgttttagagaatttggcagtacctccaactggcctcacaacagcagaccatgtgtatggcgttgtgtgggcgagcggtttgccgATGTCAACGGTGTGAACAgttgagtgccccatggtggcggtggggttatggtataagCTACTGACaactaacacaattgcattttatcgatggcaatttgaatgcacagagataaagTGACGAGATCCTCATTGTTGTTggggtatctgtgaccaacagatgtatatctgaattcccagtcatgtaaaatccataaaTTTGGGTCTAATTcattaatttaaattgactgattttcttatatgaactgtaactcagtaaaacctttgacATTTtggcatgttgcgtttatattcttgttcagtaTACTATAGTTAACAGCTTCTAATctcagagagcagagacagacagggcagaAAGTAGTGGCAGGATTCCACTCCAAAACGCACTCTGAACCTGCAGTGAGTCAACCAGACCCATTATAAATTCTAACAATACGTAGGGATTTTAAAACATCACAGAAGATGAGATGGATGATCTACAACAGGTATTACTAATCAGTGTTGGCAAGGAAAAGGGAGCATTTGACTAAGGATCCCAGGAGGTTTGGATCAATATGAAAATTATGATCTTGTGCCTTTCAAAATGCCAGGGCTTCCAGGTCGCTTAGCAACAATGGCAAGGGGTTCAAATAGACATGCCAAAGGAAAGCTCCTCTCTCTGGTACCAGCCGTTAATGCCAACCTCTTCCTAGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2069895 True 3832 lncRNA 0.40 2 40080106 40083967

Neighbor

gene id symbol gene type direction distance location
LOC118943662 NA coding upstream 167066 39912913 ~ 39913040 (+)
si:ch73-116o1.2 LOC106582394 coding upstream 167244 39890643 ~ 39912862 (+)
LOC110501860 LOC106582389 coding upstream 513482 39478254 ~ 39566624 (+)
zgc:162780 yh09 coding upstream 624981 39451592 ~ 39455125 (+)
LOC110501853 LOC106582378 coding upstream 1205792 38868673 ~ 38875945 (+)
acmsd acmsd coding downstream 87768 40171735 ~ 40185460 (+)
LOC110501869 ccnt2 coding downstream 106616 40190583 ~ 40200438 (+)
LOC110502148 rab3gap1 coding downstream 132053 40216020 ~ 40263466 (+)
LOC110501870 r3hdm1 coding downstream 273980 40357947 ~ 40418247 (+)
LOC118943589 NA coding downstream 296266 40380233 ~ 40386211 (+)
G1809175 NA non-coding upstream 41510 40038236 ~ 40038596 (+)
G1809174 NA non-coding upstream 42378 40037423 ~ 40037728 (+)
G1809173 NA non-coding upstream 42802 40037028 ~ 40037304 (+)
G1809169 NA non-coding upstream 49163 40030740 ~ 40030943 (+)
G1809167 NA non-coding upstream 53070 40026814 ~ 40027036 (+)
G1809401 NA non-coding downstream 92669 40176636 ~ 40205483 (+)
G1809450 NA non-coding downstream 142511 40226478 ~ 40226683 (+)
G1809469 NA non-coding downstream 165272 40249239 ~ 40249526 (+)
G1809499 NA non-coding downstream 183029 40266996 ~ 40267411 (+)
G1809107 NA other upstream 154711 39924414 ~ 39925395 (+)
G1808787 NA other upstream 385238 39693913 ~ 39694868 (+)
G1808209 NA other upstream 928773 39149080 ~ 39151333 (+)
G1807566 NA other upstream 1216970 38862740 ~ 38863136 (+)
G1807376 NA other upstream 1668943 38406137 ~ 38411163 (+)
G1810553 NA other downstream 1105722 41189689 ~ 41192492 (+)
G1810740 NA other downstream 1380511 41464478 ~ 41466349 (+)
LOC110501889 LOC106582433 other downstream 2172588 42256417 ~ 42389468 (+)
G1812428 NA other downstream 2639705 42723672 ~ 42724114 (+)
LOC110502157 LOC106582435 other downstream 2645634 42688215 ~ 42735867 (+)

Expression


Co-expression Network