G1809337


Basic Information

Item Value
gene id G1809337
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40080294 ~ 40083992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2070081
GAGGGAATGAAAGGGGTGGGAAAATGACTAGGAAGAGGTTGGCATTAACGGCTGGTACCAGAGAGAGGAGCTTTCCTTTGGCATGTCTATTTGAACCCCTTGCCATTGTTGCTAAGCGACCTGGAAGCCCTGGCATTTTGAAAGGCACAAGATCATAATTTTCATATTGATCCAAACCTCCTGGGATCCTTAGTCAAATGCTCCCTTTTCCTTGCCAACACTGATTAGTAATACCTGTTGTAGATCATCCATCTCATCTTCTGTGATGTTTTAAAATCCCTACGTATTGTTAGAATTTATAATGGGTCTGGTTGACTCACTGCAGGTTCAGAGTGCGTTTTGGAGTGGAATCCTGCCACTACTTtctgccctgtctgtctctgctctctgagATTAGAAGCTGTTAACTATAGTAtactgaacaagaatataaacgcaacatgccaAAATgtcaaaggttttactgagttacagttcatataagaaaatcagtcaatttaaattaatgAATTAGACCCAAAtttatggattttacatgactgggaattcagatatacatctgttggtcacagataccccAACAACAATGAGGATCTCGTCActttatctctgtgcattcaaattgccatcgataaaatgcaattgtgttagttGTCAGTAGcttataccataaccccaccgccaccatggggcactcaacTGTTCACACCGTTGACATcggcaaaccgctcgcccacacaacgccatacacatggtctgctgttgtgaggccagttggaggtactgccaaattctctaaaacaaaaaCAGCTCTGGTAAACATTCCTgcggtcagcatgccaattacacgctcccGCAAaatgagacatctgtgacattgtgttgtgtgacaaaactgcacattttagagtggccttttattgtccccagcacctgtgtacctgtgtaatgatcacgctctttaatcagcttcttgatatgctacacctgtgaggtggatggattatcttggcaaaggaaaaatgctcactaacagggatgtaaacaaatgtgtgcacaaaatatgagagaaataagctttttgtgcatatggaacatttctgggatcatttatttcagctcatgaaacatgggaccatcacttcacatgttgcttttatattttagttcagtatatATAAAGAGAGCTATACAGTGTACGGTAGGTAGGTCTGTGAGCAGCTCACACAGCTGGAGTCATATACTGTAAATGAATGTGCCCTCTGCAGTGCTTCTCCTGGCTTCTCCTGGCTTCTCTACTGACACAGCCCAGGTGCCAGTAGAGGACACAGTGATGCATGGTGGTAGAGGACTATGGCCAGTCACTCCACGGTAGTCCTCCACTCTCTGGCTTCAGAGAGaaacaaaaaaaagagagaaagggaggcccAAACAGCAGGGCCAGGCCAGTATCTGGAGGGGTGTGGCTGCCCATTGGTAagatatagagtactgtacatgcacagaacagaccagagcagaccagaccaaaccagaccaaaacagaccagagcagaccagactagactagaccagaccagaccgtcaAGCAAGGCAGAGAGTAGTTCACAGTCAACATTGACTTCAGGGTTGAGTGCGAAAAGCAAACTGTTAGCATAAGTGAAAATATGGCATTACAGTGTCCCACTGAAAAGCTGAGAACAAAGAACACAAGTCTATCAATCACTAGAAGTACAGAAACACCGTTCTACTTGACAAAGCACAAGTAGAAGCCTATCCAGATGGGAGCACACAGGGAACCAGACTAGAGACAGTTACAGTAGCTACAGTAATACCTCTTCCTCCAGATATGCATGCTGTACCACACTGTTTTGTTCTAGATAACAGTGTTAAATCCTGTCATAATAATGACTGTATCCCTCCACAACCTTGTCTGGGATAACCGTGTCTATATAACTGATAGTCATATGTTTCAGTGCCATACATGCTCAGATTCCTAAACGAAGACAACATTATTAGCCAGCTTGTTTACATGGCACTTATGTTTACaatgatatatactgtatctatgtcGGTAGAGCGTGAGAGAAAGACTGACGTCAAGGTTAGAGACGAGAAAGTAACTGGTTCAGGTAAAGTAGTATAGGTATGTATGTACAGAGCACTATATTGCAAAATTGTATTCATGACTTTTTAAACTAAATTATAATTCTTAACATGCGGTAGCCAATAGATGTGATAATGTGCCATGTTTCACAATTGCAATAGTTATATGAGGATACATTCGAGTTAcatgttaaaaaataaatgtacatgtCCCAACTTAATCTGCCTGTCCTGACAGTATGGACAGTAACCAACATGGAGAGTCAATATTATGTGCTGCCATCGGTCACTATGTACATCAGTGATCTGCTTCACAGCATATTGGATCACATCAACAGCAGTGTTCTTTCTCTTACTGTTTTCCTCCGCTTACCCCTCATAGTAGTGATGCGTTTCCTGTATACCGTACGCACATGACTGTAAATACAAAACATTAAATGTGTTTAATACACTGTTTAGATAGAGGCTTCTAGATGTAGCCAGCCAATAGGAATAGCTCAAACGGATGAATGTTATTTTCTAAACAATAGATTATTCACGTTATATTTAAGTCGTAGTATAAGTCTTTACACTGCCAGTTCAGCTCAGCTTTGAGTTGATACACTGTAAACGTGTAAGTGAGAGCTTTCTTTACCCCCACAAAGTCTTTCGAAAAATAAAAAGCACAGAGTTTAGATCATAAATTCCATCCAAAGAAGCACAGAAATAGGAAGTTAAAGAAATGTTATACTTCTTAGAGTATCATTCCTGGTCTTACATTGTTAAAGGATGTCTGTGCTCACTGCTTAGAAGGCCAGGATACAGTAACATTCACAATAACACGGACAAACTTCCTCATCAGCTGAATTTAGAGGCTGTTAAAAAAGATTGTAATTTTCCATGGAATTTGTATGTATGCTCTCATGCCTGTGTATTAATCCCAGTGTCATACAACTGAGTTGTGCATACTGTACATTGTAAGTGAGTATACTGTAGATGCTGTAGATTGACTGACATAATAGGAGCAACATCTATTTTGTAATTACTTCACTGTATGGATGTGTTTTCTCAAATGTCGCCAGATGACGTCTCGTGAAGTTGAATTCGTGCTAAGAATCTGTTACAGTAATTCCCGATTCAAAGCTGTCAAATTATTTCTAGATATGTGTTTAATGGTGTAATTGGCGGCAATGTGCTATTAATTAATTGGCTCATTCGTTTTACTTCACAAGCACTGGCAatcagacaaagacagacacagggaTACATGGAAACACACTGGTAatcagacaaagacagacacagggaTACATGGAAACACACTGGTAatcagacaaagacagacacagggaTACATGGAAACACACTGGTAATGTAAGGAAGCAGACACAAGCACAATCTCATAGACAAAACGTGTAACCATAGCGATGTCTTCTACTGATCATTCGATGAAGTTATGTTATAGCAACACTAGCCCTTTCCACTGTTTACCTTTGCATAGGCTGACACAAACCCCAGCGTTCTACAGTATATACTTTTTTGCTTTTTCTaaaacgcacacatacacattcacactcGTCTAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2070081 True 3669 lncRNA 0.41 2 40080294 40083992

Neighbor

gene id symbol gene type direction distance location
LOC110501865 LOC106582395 coding downstream 53141 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 226925 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 232297 39736429 ~ 39847997 (-)
LOC110501861 LOC106582392 coding downstream 349180 39683220 ~ 39731114 (-)
ramp1 LOC106582391 coding downstream 400125 39590029 ~ 39680169 (-)
LOC110501866 LOC106582396 coding upstream 465 40084457 ~ 40170141 (-)
LOC118943637 NA coding upstream 199413 40283405 ~ 40284842 (-)
LOC110501872 LOC106582401 coding upstream 367605 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 591311 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 691216 40736648 ~ 40813437 (-)
G1809313 NA non-coding downstream 42514 40037538 ~ 40037780 (-)
G1809307 NA non-coding downstream 48903 40031132 ~ 40031391 (-)
G1809304 NA non-coding downstream 54415 40025648 ~ 40025879 (-)
G1809297 NA non-coding downstream 67295 40012761 ~ 40012999 (-)
G1809296 NA non-coding downstream 69098 40010723 ~ 40011196 (-)
G1809372 NA non-coding upstream 43018 40127010 ~ 40128164 (-)
G1809405 NA non-coding upstream 86400 40170392 ~ 40183895 (-)
G1809410 NA non-coding upstream 100453 40184445 ~ 40185458 (-)
G1809418 ccnt2 non-coding upstream 113603 40197595 ~ 40200422 (-)
G1809427 NA non-coding upstream 126697 40210689 ~ 40210912 (-)
G1808299 NA other downstream 1135764 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1468007 38520872 ~ 38726596 (-)
G1807731 NA other downstream 1867107 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 1885198 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2320046 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 1363907 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1520982 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 2302830 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2520711 42603998 ~ 42605768 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G176633 NA non-coding NW_025047824.1 JAEQBD010000169.1 3317937 ~ 3320071 (+)