G1809737 (ubxn4)


Basic Information

Item Value
gene id G1809737
gene name ubxn4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40439110 ~ 40440904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2070539
cccaactccatattaatgcctatgattttggaatgaaatgttcgacGAGCAGCTGTCCTCATAATTTTAGTCATGTAGCATATCTAGTAACACACACCGAACGACATTTCTGTATAGCGCAACTGCTCGTATTTTGTTGCATTGTTATGCAGCAAAACTCCTGTGGTGAACCATCATTAATCAGCATCGTCCAGTGGTCTGACACACAAACATACCTTTAGATGTGGCTGGCGCTGCAGGTGGTGCGTGGCTGGGCTGGAGCTCCAGTGGGGGTGAGGGGGGCTGTGCTGGGGCTGGCTCTGAGGCTACCACAACTGGTGGGCAAGCCTCCACGGGAGTCCCTGCTTCCGCTCCCTCGCTTGCTATCTGCTGGGCGTGCATCTGTTTGACTTTGTCGATTCTTTTCATGAGTTCCTCTGCAGAGACACTCCCGGCAACAACTTCCAGGGGGATTCCATTCTCTCCAATAAAGAAACTGGACGGGATGCACACCACCGGGTAGATTTGAGAGAACTGAGAGCATGTCTCGCTCTTGGCATCCACCTTGATTGCGACACAGCAGTTATGGGAGACCTCGGCCACTCTGTCGTCCTCCCAACTGGACATAATTTGTGCTGACACCTCATCGTCGCCTGTTATTACGACCACGAAGATGGAGCTCTGTTCTTTGGCTGAGATGATGGCTGCTGGAATAGAGCCTCCAAACCAAAGCATTTTAATAAAATGTGTTGGCTTTTTCTGTTTTGTAATGCTGTCCAGTCGTTTCTATTCTGAAAGTATTAGAAACTGTGCTAGAACGTTCAATCTCATCGCTGAACTAAATTAGCATGATGGGTGTAGTAGTCCGTAGGCATTAACGCTTCCTTATGGGACTTGTAGTCCACACAATTG

Function

symbol description
ubxn4 Orthologous to human UBXN4 (UBX domain protein 4).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2070539 True 891 lncRNA 0.48 5 40439110 40440904

Neighbor

gene id symbol gene type direction distance location
LOC118943637 NA coding downstream 154268 40283405 ~ 40284842 (-)
LOC110501866 LOC106582396 coding downstream 268969 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 411957 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 585741 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 591113 39736429 ~ 39847997 (-)
LOC110501872 LOC106582401 coding upstream 10693 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 234399 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 334304 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 394272 40835176 ~ 40882242 (-)
LOC110502149 LOC106586321 coding upstream 442692 40883596 ~ 40929237 (-)
G1809683 r3hdm1 non-coding downstream 47136 40391252 ~ 40391974 (-)
G1809541 NA non-coding downstream 146071 40292840 ~ 40293039 (-)
G1809509 NA non-coding downstream 165362 40273400 ~ 40273748 (-)
G1809505 NA non-coding downstream 168145 40270740 ~ 40270965 (-)
G1809498 NA non-coding downstream 173227 40265654 ~ 40265883 (-)
G1809742 ubxn4 non-coding upstream 1558 40442462 ~ 40448038 (-)
G1809751 NA non-coding upstream 49793 40490697 ~ 40491131 (-)
G1809756 NA non-coding upstream 62677 40503581 ~ 40503819 (-)
G1809758 NA non-coding upstream 66527 40507431 ~ 40507932 (-)
G1809768 NA non-coding upstream 72888 40513792 ~ 40514154 (-)
G1808299 NA other downstream 1494580 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1826823 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2225923 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2244014 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2678862 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 1006995 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1164070 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 1945918 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2163799 42603998 ~ 42605768 (-)

Expression


Co-expression Network