G1812079 (LOC106582433)


Basic Information

Item Value
gene id G1812079
gene name LOC106582433
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42386822 ~ 42389273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2073040
CTGGCTTTGTGATTGAATTAGGTCAGATTCCATTTTGTACCCTATTTACCATAACAACGTTTGGAGGAAGACGGGACGTAGTTTCACACCACGTAATGAATGTTTCTACTTCATCAGAATACACAGCACCACCCATCCTTGGTCTGTACATGCTTATACACACATGTACCAACAAATGCAAACACACATACCGTATTCAAAGCCCCAAAAAATGTGTGTGAACGGAAGAAAGAGAATGGTTGTGATAGAGGTTATGTAGCACGGAAACATCTGGAAAATATGAATTATTTTTCAAAAAGAATGTTTGGTTTTATTAAACATATATTCATAATATACCTGTACAATTATAGCCATACAAAATTGGCCCTCAAAGTAATCACAATATCAACAAGTACAAATAGGAGTCTCAGAGGTGAATTATAACTTGCTTTCAAGGACACTTTAATTTGAAAGAAAAATGTTTTCAGGCAATACCTCAGCCAATCTTATTATTTTGTGACGGTGTGTATATGAATTGTTGCTCATGAAAGAGTTTTACGTATGAATTTTCATTCTCTGTTTTTATTGTTTCTAAACTGTCAAACTGGGTAATTTTGCACTGATGATACTTTCCCTCTTCATTTTAGGTGGAAAATAAAACTAAGCTGAGCATCCACATCCATCATCCAATACCAGTAAACACTAATCACCTTATAATGTAGATCTAACATAGGGATACTGTTGACAATCAGTACAAAAGCAATGAATTACAAACTTCAAATAAGAAATAAGATATAAAATGGTCACCAATGCATGACCAGGATCAAAGGTGTGCCAGAACAAATGGCTGCTTGAGGAAGCAATCCAAACGAAACAATGAAAAGTACCAAGAAAAGACAAAGAGCTTATGAGAAGATGAGGAACAACTAAAGCTTTGTATATGGCAGCTCTTTGAAGACTCTTCTAACCCTTGGCCGGCAGCCACTTGAGTGGGATGTGATGGGTTGGTTCTCTTGCTAGGGGACAGCTAGCAGATGTTCCAGTCAGCTGGGTTCTTTTTACAGTCTCTTCCTTGCAGCAATACAAAGCATCCTAGCCTACGGCATAGAAACCTCAAGAACATTGGGCAGAAAGAACAATGATTTTCAATTTTCCAAAGAAAAATGTAGGAAACCGGTCCAGGCACCTGTCTCTTGTATTGATGTAATTTTTAAATGGCTTTATTTAGGGATTTAATGAAATTTAAATATATAACTTTTTGTATTTAATCTTAATTAATCACTGCATTATCAAGATCAGTAAAACAATACTTATCTTATTCCaatgtgttatttaatattaTGTTATCTAAGAAGGCCTTTGCATTGAGCCTTTTCAACCATTCCCAGAGCACTGCACTGCGGTACTGTAATTACCATCAAAATGGTGGCTGAATAGTCTCCCTGCCCTCTGAAGGCAACCCACTCTGTATTGACCCTCTGTATTACATCAATGGCACAGATGTGAAAGCTGTTGAACTTCTCGTCCTTTTCGTAAGTATTTGAAATGGAGTAAGTGCATCTGTGTGTAGTTTCTGTGCGTCAGGAGATTTCTTCCCCACACGACAGTGGGATAGTTTAATCTTGGCCATCTACACCATTGTGGCTTTTTCCCATAACATTGCCCACTCTTCCCATAACATTGACCACTCTTCCATAACATTGACCACTCTTCCCATAACATTGACCACTCTTCCCATAACATTGCTCAATCTTCCATAACATTGCTCACTCTTCCATAACATGGCCCACTTTTACCATAATATTGACCACTCTTCCCATAACATTGACCACTCTTCCATAACATTGCCCACTTTTACCATAACATTGAATATTCTAATCTTTCCAGACTCTTTGTATTTCTGTCATTGGATAAATCCATTGCACCATATCCATATGCTTCAATCTCTTATGGCACTGTTTTCCTGTCCCATCACCACCATTTGTGAGCCGGCCGGTCAACATATTTGCAGCTACAAGTCCCGTCCTACGGAGTATCTACACAGAAACGGGAAGAAATTCCCCATCAGGATATTCCCACAGTTCCCTAAAGGAGAAGGAATTCTTAATTTCTACCCCAGAGGAGGGAGGAAAAAGGCTGCCTCCTCCTGTGCAGACAGCTAGACAAAACAGAAGAGAGGtaagcggcgatggctagaaggcttGGCTGGACACTGTGGTCAGATATAGTACTCCCTGTTGTCCCTGAGGGTGGAGCTATGACTGTCATGGAGGTGGCACTCTGTCCTGTAGGCTGGTTCTGCCTGGTAGGCTGCTTCTCTCCGGCAGGCTATTTCCAGGTTGGTTTGGTGCTCCTTCTCCTTGATGCTGGCGTCTCTCCGGGCCTGCCGGTGCTGGTACAGGAAACGggtcatcaccaccactacacaCAGAGTGATGAAGATTACTGCTGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2073040 True 2432 TUCP 0.41 2 42386822 42389273

Neighbor

gene id symbol gene type direction distance location
LOC110502152 LOC106582422 coding downstream 487082 41798454 ~ 41899740 (-)
LOC110502131 LOC106582415 coding downstream 619644 41764963 ~ 41767178 (-)
LOC110501888 LOC106582420 coding downstream 642998 41668896 ~ 41743824 (-)
LOC110501887 LOC106582419 coding downstream 762026 41622821 ~ 41624796 (-)
LOC110502151 arl4c coding downstream 773686 41612562 ~ 41613136 (-)
LOC110501896 LOC106582434 coding upstream 202945 42592218 ~ 42603449 (-)
LOC110502155 psd12 coding upstream 214725 42603998 ~ 42605768 (-)
LOC110501897 LOC106582436 coding upstream 351346 42740619 ~ 42748577 (-)
LOC110501898 LOC106582438 coding upstream 380980 42770253 ~ 42797492 (-)
LOC110501899 LOC106582439 coding upstream 411747 42801020 ~ 42823612 (-)
G1811876 NA non-coding downstream 142985 42243597 ~ 42243837 (-)
G1811790 NA non-coding downstream 200188 42186388 ~ 42186634 (-)
G1811748 NA non-coding downstream 230935 42155653 ~ 42155887 (-)
G1811725 NA non-coding downstream 244529 42142085 ~ 42142293 (-)
G1811681 NA non-coding downstream 276977 42109279 ~ 42109845 (-)
G1812093 NA non-coding upstream 15669 42404942 ~ 42406795 (-)
G1812115 NA non-coding upstream 44062 42433335 ~ 42433544 (-)
G1812120 NA non-coding upstream 48455 42437728 ~ 42437945 (-)
G1812140 NA non-coding upstream 66292 42455565 ~ 42455917 (-)
G1812149 NA non-coding upstream 71532 42460805 ~ 42461076 (-)
G1811042 NA other downstream 781591 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 921175 41447899 ~ 41523764 (-)
LOC110501878 LOC106582406 other downstream 1573435 40736648 ~ 40813437 (-)
G1808299 NA other downstream 3442292 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 3774535 38520872 ~ 38726596 (-)
G1812404 NA other upstream 287984 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 2121134 44473683 ~ 44553607 (-)
G1814480 NA other upstream 2284174 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 3449477 45838750 ~ 45840982 (-)

Expression


Co-expression Network