G1812346


Basic Information

Item Value
gene id G1812346
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42589367 ~ 42591134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2073337
CTCTCTCTTTTCACAGATTGACTTTAAGAGCCTGATTGCTATTAATTTACCACCAGCTGACTTCAGCATTTACtcccacctatctctctctcacacacacacacacacacacacacacacacacacacacacacccagcagtATTTACACACCTTCACCACTGTAACTCAGTGCAGACAGACGACAGGGGGCTGTTACTCTctaacagagaggagcagagccgTAGGCTGGGGCAATTCCACACTGTCCTCTACCAAAGTGTTAATTGAAAAGACGACATTAAGAATGTTAAAGGAGCCCTTGTTGACCTCACCTTAAAAGTGTCACTGTAATCTGTTAGTGAAGCTCTGCTGCTCTTTCCTGTGCAAATGGTTCTAGCAGGTGAAACCTTTCAATGAACAAATGCCTCCCTCCCCTGAGTCCATTTTCACATGGGCCACTTTGAAATCAATCGACAGTAGGCTAGTGATTTTCACAGCTCATGAGAGAAGCAAGAGTTTGGTAATTGCCATTATAAAATGAGTCTCATGACTTGTTATAGGATGTCACGGTCACAGTTGAAATCCGTTTTTACAGAACTCTCTTATGGCGGCTCAGACGGATCATTTTACAAAGCTAGACACCAACCATGTGGCAAGAATTGGAAAACACATTCAAAAGGGCAACTGGAGGACGAAGAGTAAGCTGCATCATGACGATAAAAAATAAGTTAAACTTCTAGAAGGTTGTGGCCTACTTCTTCAGTACATTTTATCTGGGGCTATATAAACCATTCAgctgaaaatgtatttaattaagTCCAACTCTGAAAACTGAGCAGCACAGTTCATGTGGTAGTTCAGTTTGATCGTTTCGCCATATGATGCCATCTTCGGCCAGTCTGGACTCTGGAGTCAGTTTTTGGTCCCACTGGCTCGGTTGTCTAAGCCTGAACACACTGACCAAATCTGTAGAAATCGCTCTGGCTCTGCGAGAGAAGCAGTGAAAATGTATCTTTATTTTGTCAGCTGGAGGAGCTAGCGTCTCATAGTAACTCATCAACTCCTGATTTGCCAGTACTGATACAGTACTGTGAGACAAGGGGAAGTTTCCAATTACGCACATCCTGCTGATAGATCCCAACAGCATTCTTGGGTCTTGGACTTCATATGATACTTTCTCCCAATTGAATTAGTGTAATCGGCAGTTTGAATCAAAGAAACCAACGTTTCTTGGTCCAATGCTAAAATGCTGTCTGGTTTCAATGGTTTCTATTTCAAAGTTTTCTTATGTCAGTAATTTCTTTGGATTTGTGAAACATGGAACtgcatttttcatttttttctcgtCTTTTCAATTTCTTTGTCAGTTGACTGCGAGGGAGATTTAGGATTATGAAGCACAAACCAGATTAGGTGCCGTGGCCTCAGTCGAGATGGTTTGCAGTTGCACTGTAGGAGAGGAGGCTCAGTTTCAAAAGGGGGCACTGTTGTGCCACTGCAACAGTACATTTTCTGTCTTTGATATGCATACTGTGGTGTGTCGTTTTGAGTCTCCGTGCTTTTGTCCTGGGTGCAGTTGATGTCAAGAAGCTTCTATTATGACATCAGCATTTTAAGAATATACATTTTTAATGTCCTCAGAGGGACTTATCCAGCAGTTGTTGTTGGAGGTTCTTTAGTCTTTGATTTGAGAGAATATTCAGGATGCTAATATATGATATACATACTAATATGCCTGCTGCCAGTAAAATAGGCTATAATAGCAGAGGTATATGATATTATCAGAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2073337 True 1768 lncRNA 0.42 1 42589367 42591134

Neighbor

gene id symbol gene type direction distance location
LOC110502152 LOC106582422 coding downstream 689627 41798454 ~ 41899740 (-)
LOC110502131 LOC106582415 coding downstream 822189 41764963 ~ 41767178 (-)
LOC110501888 LOC106582420 coding downstream 845543 41668896 ~ 41743824 (-)
LOC110501887 LOC106582419 coding downstream 964571 41622821 ~ 41624796 (-)
LOC110502151 arl4c coding downstream 976231 41612562 ~ 41613136 (-)
LOC110501896 LOC106582434 coding upstream 1084 42592218 ~ 42603449 (-)
LOC110502155 psd12 coding upstream 12864 42603998 ~ 42605768 (-)
LOC110501897 LOC106582436 coding upstream 149485 42740619 ~ 42748577 (-)
LOC110501898 LOC106582438 coding upstream 179119 42770253 ~ 42797492 (-)
LOC110501899 LOC106582439 coding upstream 209886 42801020 ~ 42823612 (-)
G1812344 NA non-coding downstream 812 42588303 ~ 42588555 (-)
G1812340 NA non-coding downstream 5931 42583067 ~ 42583436 (-)
G1812334 NA non-coding downstream 17512 42568217 ~ 42571855 (-)
G1812279 NA non-coding downstream 108905 42480247 ~ 42480462 (-)
G1812276 NA non-coding downstream 112698 42476287 ~ 42476669 (-)
G1812352 NA non-coding upstream 16457 42607591 ~ 42608500 (-)
G1812395 NA non-coding upstream 70444 42661578 ~ 42661930 (-)
G1812491 NA non-coding upstream 97076 42688210 ~ 42688979 (-)
G1812495 NA non-coding upstream 105088 42696222 ~ 42696512 (-)
G1812079 LOC106582433 other downstream 200094 42386822 ~ 42389273 (-)
G1811042 NA other downstream 984136 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 1123720 41447899 ~ 41523764 (-)
LOC110501878 LOC106582406 other downstream 1775980 40736648 ~ 40813437 (-)
G1808299 NA other downstream 3644837 38944136 ~ 38944530 (-)
G1812404 NA other upstream 86123 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 1919273 44473683 ~ 44553607 (-)
G1814480 NA other upstream 2082313 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 3247616 45838750 ~ 45840982 (-)

Expression


Co-expression Network