XLOC_003727


Basic Information

Item Value
gene id XLOC_003727
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44163330 ~ 44196871 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008698
TTTTGATATCCAGTCTTCGCAtgacactctgattggtttatcctGAGTCGCGGTGTGGAAAGTAACAGGTATCACGTGATCGTTTCTTAAGCAGCGAAATATTTTTTAACGGTCGTCTGAAAGGTGAGATTCCCGGATGTCCGGCTTCACTTTTGGGTTCCTGTGGGACAGAAACACCAGGCCGCTGAACACCAGCAAAACAGACGCAAAGAAGCCCACAATAATCCCAGGCCCGACAGACTGGCTGAGCGGAGCTGACGGCATCAGAAAGCGTGACGGAGGTAAATCCGTGTTTCCGGCCGGACCGAAGCTCCATCTGCCACTGAACAACAGAATAATGAAGGAGAGATTAACCTTTCATGCGGACACAAAGCAGATCAGCAGCTCCACATTCTTCTCAATCTGCCGTGCACTGTTAAAATATTGCTGCCTTAAACTATttaagtcatctcaacttacatcaatcaaactgactcaaaatattaagttcaacttttgtataacttaaaaaaatgtagttgaaacctgataaattcattaaaataagagttaaaGCAgcatcaaaatatttaaactatttgtcattcatttgtttacagtgtatgtcTGTCATTTCACTCACAATAATGACCAGAGATCAACACTTATTTGGatgcttcattcattttccttcagcttagtccctttattccacagtggaatgaaccagcaactattccagcatatgttgtacatagcagatgcccttttagtagcatcccagtactgggaaacacccattcacactcatccactatggctaatttagttcatcaattcccctagcGCATGTGTTCACACACGCCAACacaaaggagaacatgcaaactccacacagaaacgccaaatgacccagccaggacttaaaccagtgactttcttgctgtgaggtgacagtgctaaccactgagccaccgtgccgcccctctGGAtgctttaattacaaaaaaaacaaaaataaagcaactaTTCACACTATAATGTCGTTCTTTTCTCTTTTCGttcctgttttaacacattctttatctgtttttaatcatttgttgtgtttatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008698 True 1093 lncRNA 0.41 3 44163330 44196871

Neighbor

gene id symbol gene type direction distance location
XLOC_003726 FO704721.1 coding upstream 25059 44135351 ~ 44138271 (+)
XLOC_003725 FP016005.2 coding upstream 138452 44024762 ~ 44024878 (+)
XLOC_003724 NA coding upstream 212670 43943882 ~ 43950660 (+)
XLOC_003723 NA coding upstream 340477 43821555 ~ 43822853 (+)
XLOC_003722 NA coding upstream 345974 43811629 ~ 43817356 (+)
XLOC_003728 NA coding downstream 29329 44226200 ~ 44447359 (+)
XLOC_003729 HNRNPLL coding downstream 103677 44300548 ~ 44309032 (+)
XLOC_003730 NA coding downstream 114463 44311334 ~ 44314410 (+)
XLOC_003731 NA coding downstream 120332 44317203 ~ 44318134 (+)
XLOC_003732 CABZ01100185.1 coding downstream 127890 44324761 ~ 44335322 (+)
XLOC_003369 CR854846.2 misc upstream 28040248 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31451334 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31469067 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31477731 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31483302 12679732 ~ 12680028 (+)
XLOC_003718 CABZ01073015.1 non-coding upstream 516656 43643158 ~ 43646674 (+)
XLOC_003733 CABZ01100187.1 non-coding downstream 138795 44335666 ~ 44335780 (+)

Expression


Co-expression Network