XLOC_037279


Basic Information

Item Value
gene id XLOC_037279
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33997142 ~ 34008566 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075162
CCGTGAGCCAGGAGGGAGCTGCCCCACTGCGATTCCTCCTGTGAAAACAGCAACCCCGTCACTCACCACACAAGTACCTCATTATCATCCACAGTCGGCTCCAAGTAAATCACTCCAATGCGCTGCAGCGGAGGTAAGCGGCCAGGCCGACATGTTCAATGCAAATCATACATACCGAAATTTCTGCCGCCGAGGACAGGACATAATACAAAACATAAGACAAACACGTCTGGTTTCCAAGCAACAGAGCCAGTCTGAACGCACCCTGAGGGAGGTTTTTCGTTTTTTTCGGGGTTCATCTCGAGGAGATTTCCTTGTGGTATTTGACTCCTCTGACCTCCCTCAAAAGGTCTGGATTTGCGTACCTTGGGAAAGCAGGAATTTTTTTGCGCCCGAGCTGGTGCAAGGATCTTATGAAGGGGATGCATCTGAAACATCTCTATTATCAGTCTGACAGCGGCTCGCTCTCCTCAAGACAGCAGTCCAGAAACTGCAACAAGAGGCCCGAGATCCTCTTGATTATTTTTAATGGTCTGTTTTACACCCTTTCAAAGGTACAAAAGCTGCTTGTTTTTTTGCAACCCACTAGCAACATACTTCTATACTCAAGACAAGTCTTATTATTAGAGAACAATAGAGCCTAAACAATAGCATCTTATTATCgattaacaaaatagttttgactCATCTCtcaattttttaaagtgtataaaaACTAGCTTACTAAAAAGACTGCAGTGGAACATTGTAGCATTTGACTGGAGATTTTACATTTCCATCAATAATGGGCaagatttattaaattttatcaattattttagtCTAAATGTGGGCATGCATTAACAATTTGTTCCCCCGTTTTAAAACATCTTGGCTATGGTAAACTAATTCATTCTCCTGTTTTAATTTCAAGAACTGTTTTACAATGTGGACACAATTTAGTAAAACGAGGGAAAGAAGAATTATTGGCTATAGTTAAACTGTCCTTCCTGTAGTTAAAAGCTACAGTTACCTGCAAACTGTGCAGATGCAAATATTAACTATCCTTACCTGCATAATGTTACTGTACATCACAAATAATTCTTTTTGGTATTGTAATATGTGGTTAGACAATGTCTGTACTTAAGTTATGCACACaatttttacacaaac
>TCONS_00075163
GCGGAGGTAAGCGGCCAGGCCGACATGTTCAATGCAAATCATACATACCGAAATTTCTGCCGCCGAGGACAGGACATAATACAAAACATAAGACAAACACGTCTGGTTTCCAAGCAACAGAGCCAGTCTGAACGCACCCTGAGGGAGGTTTTTCGTTTTTTTCGGGGTTCATCTCGAGGAGATTTCCTTGTGGTATTTGACTCCTCTGACCTCCCTCAAAAGGTCTGGATTTGCGTACCTTGGGAAAGCAGGAATTTTTTTGCGCCCGAGCTGGTGCAAGGATCTTATGAAGGGGATGCATCTGAAACATCTCTATTATCAGTCTGACAGCGGCTCGCTCTCCTCAAGACAGCAGTCCAGAAACTGCAACAAGAGGCCCGAGATCCTCTTGATTATTTTTAATGGTCTGTTTTACACCCTTTCAAAGGTTCCATTGACTAGCCACCCCTCTGCCGTCCCATTAAAGAAATCCTCATGGAGTCAATCGAGACTCATAT
>TCONS_00073363
TGCAAATCATACATACCGAAATTTCTGCCGCCGAGGACAGGACATAATACAAAACATAAGACAAACACGTCTGGTTTCCAAGCAACAGAGCCAGTCTGAACGCACCCTGAGGGAGGTTTTTCGTTTTTTTCGGGGTTCATCTCGAGGAGATTTCCTTGTGGTATTTGACTCCTCTGACCTCCCTCAAAAGGTCTGGATTTGCGTACCTTGGGAAAGCAGGAATTTTTTTGCGCCCGAGCTGGTGCAAGGATCTTATGAAGGGGATGCATCTGAAACATCTCTATTATCAGTCTGACAGCGGCTCGCTCTCCTCAAGACAGCAGTCCAGAAACTGCAACAAGAGGCCCGAGATCCTCTTGATTATTTTTAATGGTCTGTTTTACACCCTTTCAAAGaccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatatgttttactcagcggatgcccttccagccgcaacccatcactgggaaacatccatacatactcaattacccaattcacctatagcgcatgtctttggacttgtgggggaaaccagagcacccagaggaaacccacgcaaacacgggaagaacatgcaaactccacactgaaacaccaactgacccagcagaggctcaaaccagcaaccttcttgctgtgaggcgactgtgctacgcAAAAGATGATGACAtttaaaagagaacaaaatccaTGTCTGTTCTCTGACTGTTAACAATCTGTAATTGTCAATTGTTAATAACAGACGTTCAAGCATTCTGCCCAGCAACATGTCAGCAGCATCTATTCAAACCAGGTCTCAGTCTCTTCATGCATATCGCTGGCATTTCACTACGAACATACACTAGGACAGGAACATGAACCAACAGGATTGTTATCATTTTTTTGTACTGTTTGCCTTGAATGAACTTGCAGGATGGTATGATTCAGTCACACATGCTTAAGGGGCTGGAAGAGTGACAGTGAAAAGGaacaataacaaaaactaaaCCTACACCAAATATACATGTGCATCCAATGCAACAGATTCCACAAGTAAACTAAATTTAGGTGGGTGGTGTTTAtagtaaattgtaaaaaatattgtaatag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075162 False 1152 lncRNA 0.40 2 33997142 34005582
TCONS_00075163 False 497 lncRNA 0.47 3 33997269 34008566
TCONS_00073363 True 1121 lncRNA 0.44 3 33997301 34006838

Neighbor

gene id symbol gene type direction distance location
XLOC_037278 kdm6a coding upstream 135018 33788389 ~ 33862124 (+)
XLOC_037277 BX572627.1 coding upstream 197386 33783061 ~ 33799756 (+)
XLOC_037276 NA coding upstream 232965 33726683 ~ 33764177 (+)
XLOC_037275 si:dkey-216e24.9 coding upstream 570107 33423170 ~ 33427035 (+)
XLOC_037274 gpr34b coding upstream 577821 33417969 ~ 33419321 (+)
XLOC_037280 ccdc80 coding downstream 80590 34089156 ~ 34113209 (+)
XLOC_037281 f5 coding downstream 118439 34127005 ~ 34147996 (+)
XLOC_037282 gpr161 coding downstream 140148 34148714 ~ 34162374 (+)
XLOC_037283 mpc2 coding downstream 213431 34221997 ~ 34227472 (+)
XLOC_037284 nxpe3 coding downstream 221501 34230067 ~ 34243967 (+)
XLOC_037270 BX545856.2 non-coding upstream 751387 33244198 ~ 33245755 (+)
XLOC_037261 BX511259.1 non-coding upstream 914961 33074680 ~ 33082181 (+)
XLOC_037257 NA non-coding upstream 1102042 32891897 ~ 32895100 (+)
XLOC_037254 NA non-coding upstream 1459758 32536746 ~ 32537384 (+)
XLOC_037285 NA non-coding downstream 278188 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 362294 34370860 ~ 34378332 (+)
XLOC_037289 NA non-coding downstream 381885 34390451 ~ 34391153 (+)
XLOC_037293 BX601644.1 non-coding downstream 782184 34790750 ~ 34790887 (+)
XLOC_037294 BX601644.6 non-coding downstream 814283 34822849 ~ 34828098 (+)

Expression


Co-expression Network