XLOC_003728


Basic Information

Item Value
gene id XLOC_003728
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44226200 ~ 44447359 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008430
CCTGTTTCTCCTACTGGCGCTTTGTTGAGGCAGCGGACGGACTGTACCATTCATCTGTGGGTGTACAACACAATCCCATCTACAACATTTATATCTGTATTCTCCCACAAAACACGTAATATAGCATTATAGCAGAGTTAAACACTGTATGGAGTAAATTAAATCACATATgtgattttaaatttaatttattgaaatTGGTTGATCAGCAGTGTTGTTGATTCACCCCTCCGCCGCGTCTGTTGCCATGTTCCCGGTTCCCTTATGGGTGTGGTGACGAGATTGCTTGTGAAAACTGACTCTCAGCTCGTGAGGGCTGCGTGGccctttaaatgtgtttaaaacggAGTTACGATTAATTCTGCTGCATTAAAATTTATTTCTGATCTCATCGTCATGCGAGGAATCTGAGAAGAGCCGAATTTACCCGAATCAGCCTGATCAGGTCCAGCACGTCGTCGTCTCAGGTGCAGGTCAAACAGGAACAATGAGTGAGTTGGAGCAGTTGCGTCAGGAAGCGGATCAGCTTCGCAATCAGATCCGGGATGCAAGAAAGGCCTGCAGTGACTCCACACTTTCGCAGATGACAGCGAGTCTGGACTCAGTGGGACGGATACAGATGCGGACGAGACGCACACTCAGAGGCCACCTCGCTAAAATATATGCCATGCACTGGGGCAGCGACTCCAGGTGTGTGTTTGAAGACTCATTCAGAGACCATCCCTGACTATCCGCACTGGCTTTAAAtgcagaaaccattgctttaaAGCCTCCTGTAAGCTGTGTGATTAATATTACATGAAATAACACTTGGGACCCCAGTGTTCATTATCCATGGAGCTGTAATAAGGCCTTTCTCACCATGTTACTCAAATCCCATCTGTGTCCCGTTTTAATTACTTCTCGTTGACTGAAAAAAAGCATG
>TCONS_00007200
CCTGTTTCTCCTACTGGCGCTTTGTTGAGGCAGCGGACGGACTGTACCATTCATCTGTGGGTGTACAACACAATCCCATCTACAACATTTATATCTGTATTCTCCCACAAAACACGTAATATAGCATTATAGCAGAGTTAAACACTGTATGGAGTAAATTAAATCACATATgtgattttaaatttaatttattgaaatTGGTTGATCAGCAGTGTTGTTGATTCACCCCTCCGCCGCGTCTGTTGCCATGTTCCCGGTTCCCTTATGGGTGTGGTGACGAGATTGCTTGTGAAAACTGACTCTCAGCTCGTGAGGGCTGCGTGGccctttaaatgtgtttaaaacggAGTTACGATTAATTCTGCTGCATTAAAATTTATTTCTGATCTCATCGTCATGCGAGGAATCTGAGAAGAGCCGAATTTACCCGAATCAGCCTGATCAGGTCCAGCACGTCGTCGTCTCAGGTGCAGGTCAAACAGGAACAATGAGTGAGTTGGAGCAGTTGCGTCAGGAAGCGGATCAGCTTCGCAATCAGATCCGGGATGCAAGAAAGGCCTGCAGTGACTCCACACTTTCGCAGATGACAGCGAGTCTGGACTCAGTGGGACGGATACAGATGCGGACGAGACGCACACTCAGAGGCCACCTCGCTAAAATATATGCCATGCACTGGGGCAGCGACTCCAGgttGCTTGTCAGTGCCTCCCAAGATGGAAAGCTGATCATATGGGATGGATATACAACCAACAAGATGCATGCTATTCCCCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCCCCGTCGGGGAACTATGTGGCCTGCGGAGGCCTGGACAACATCTGCTCTACCTACAGCCTTAAAACCCGTGAGGGAAACGTCAGGGTTAACCGGGAGCTGGCCGGACACACGGGTTATCTGTCTTGCTGTCGTTTTCTTGATGACAATCAGATCATCACCAGCTCTGGTGACACCACATGtgcattgtgggacatCGAGACAGGCCAGCAGACCACCAGTTTCACAGGGCACACAGGAGACGTGATGAGTCTGTCGGTCAGTCCCGACTCAAAGACGTTCGTTTCGGGTGCCTGCGATGCCTCCGCCAAACTGTGGGACATCAGAGACGGGATGTGCAGACAGTCCTTTACTGGACATGTCTCCGATATCAATGCCGTCTGCTTCTTCCCGAATGGAAACGCCTTCACGACGGGCTCAGACGACGCCACCTGCAGGCTGTTCGACCTGCGTGCGGATCAGGAGCTGATGATGTACACTCATGATAACATCATCTGCGGCATCACCTCCGTGGCCTTCTCCAAGAGCGGACGCCTGCTGCTGGCCGGATATGACGACTTCAACTGCAACGTCTGGGACACTTTAAAAGGAGAACGGACGGGCGTCCTAGCCGGCCATGACAACAGAGTGAGCTGTTTAGGAGTAACCGATGACGGGATGGCGGTGGCCACAGGATCATGGGACAGTTTCCTCCGGATCTGGAATTAAAGTCTCCAAATTCCAGTTTCCTTTTGCGCCCATTTTCTACGTATTTCCGCAGCGGCTCCTCTGTATTCCAGTTATTATTACACATGATTTTCAGTATGTAGTTTAATCCCGTGGAAAAGCCAATCGCCACAGGAACCACAAAAAGAGATTATTAAAGTGTCATTgtgtaatatgtaaatatacatgtatatgaaTATAGATATGGTATATATGTACAGCGTTACGTGTATGTATATACCATATAGTATATACATACATAGTGTTCATGTATATATTTTTCTAGTCGACCATTGGCCCATGACAATTTTATTAATCCTTcatgttttgtattttactttCTGTTTCGTGTACATAGAAAACGACGCTAAACTAGATGGAACGTTGCGACGTCAGTCTGTATTACAAAATATTTGTGAGGTTTTCATGCGTTGGACAACAAAAGCGTAAAAGACGTGATTTTATGCAGATGACctctgtatttgttttgttttgattattattttttgacatGCCACTAAATCAATCATCATTTATTGGTGCTTGAGGGTGTTTGGAAAGACCGCACTGAATTTTCTCACAGCCTTGAGACGGAATGTTTAATTCCGCGCCTTATTTTTAAGGCGTttcttaattttgatttataaaGAAATTTGTAATCTGTCCGCCCTCTGCTTAGCCTTAAATACTAGCGATCACGATAGAAATAATCCTAGTATATCAATTCTGCTTCTCAGTGCTTTAAAaggaaatttaattaattgataacACTCGCCTTACTTCTGTTCTTTTTATTGTTgcttttatgattaaaaatggCCACAAACCGTCCTAAATTTGCTGGAATTGCAGTGTTACTAAGATTTAGTGCTGTTAAGCGATTATTCGCATAAAAAGTTTGTTTACATAGTTATggtgtgtgtctgcagtgtatATTTAACCATGTATTTTACATAACAAAAAACTTAGACTATACAcacaaactaaattaatatacATTCATTTTTTCGGCTTTGCcccttaatctggggtcgccacagcggaatgaaccgccaacttatacaacatatgttttacacagcggatgcccttccagctgcaacccatcactgggaaacatccatacagtcccattcacacacacacacactatggacagtttagcccaGTCTatttcacttatagtgcatgtctttggactgtgggggaaaccaatgccaacacggggagaacatgctaactccacacagaaacgccaactgacctagccttggctcaaaccagcgaccttcttgctgtgaagcgaacgtgctacccactgcaccaccgtgcagcctaACTAAATTAATGTACATTATGTaactacaaacttttattttgtatgctaTTAATCgcatataaaataaattgtatataaaagtgtgtgtgtgtgtgtgcgcgcgcgtgtgcgtatgtatggatgtatatatttatgcatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacacacacacatatatatatatatatatatatacacatactgtatacacacacacacacacagttgaagtcagaattattagcccccttgaattattagaccacttgtttattttttttccccaatttctgtttaacggagagaagatttttttcaacacatttctaaacataatagttctaatacctcatctctaataactgatttattttatctttgtcatgatgactgtaaataatattttactagatattcttcaagatacttctaataattttgtccctaaattggtgtttaaaaaattaaaaactgcttttattctagccaaaataaaacaaataagtctttctccagaagagaaaatatgtgttaaacatcatttgggaaatatttaatatttaataattctgctaataattctgacttcaactgtacacacacacacacatacacacacacacttgaagtcagaattattcgccccctttaaaaaatgttcttatttttaaaatattttccaaagtatgtttaacagagcaaggaaattttcacagtatgtctaataataagaaatgtgttgaaaaaaaaatcttctctccgttaaacagaaattgggggcaaAATAAAAAAGcgttctaataattcaggggggcttataatttatatatacatacagttgaagtcagttattaacccccctgttttttccctaatttctgattaatggagagattttatcaacacatttctgcacataatagttttaataactcatttcttataactgatttattttatctttgtcatgatgacagtaaataatgtttgactatatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattaggttaactaggcaggttagggtaattaggcaagttatatagcttacaggggctaataatattaaccttaaaatgttttttttaaaaattaaaaactacttttttctagtcgaaataaagcaaataagactttctctagaagaaaaaatattatcagacatactgtgaaaatgtccttgctcctttaaacatcatttgggaaatattttttaaaaaatgttttaaaaattcagGGGAGGCTAATCATTTAACTTCaacggtcggtcggtcggtctgtcggtaggtagatagatagcaACCAAAAT
>TCONS_00007201
CAGGTGCAGGTCAAACAGGAACAATGAGTGAGTTGGAGCAGTTGCGTCAGGAAGCGGATCAGCTTCGCAATCAGATCCGGGATGCAAGAAAGGCCTGCAGTGACTCCACACTTTCGCAGATGACAGCGAGTCTGGACTCAGTGGGACGGATACAGATGCGGACGAGACGCACACTCAGAGGCCACCTCGCTAAAATATATGCCATGCACTGGGGCAGCGACTCCAGgttGCTTGTCAGTGCCTCCCAAGATGGAAAGCTGATCATATGGGATGGATATACAACCAACAAGATGCATGCTATTCCCCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCCCCGTCGGGGAACTATGTGGCCTGCGGAGGCCTGGACAACATCTGCTCTACCTACAGCCTTAAAACCCGTGAGGGAAACGTCAGGGTTAACCGGGAGCTGGCCGGACACACGGGTTATCTGTCTTGCTGTCGTTTTCTTGATGACAATCAGATCATCACCAGCTCTGGTGACACCACATGtgcattgtgggacatCGAGACAGGCCAGCAGACCACCAGTTTCACAGGGCACACAGGAGACGTGATGAGTCTGTCGGTCAGTCCCGACTCAAAGACGTTCGTTTCGGGTGCCTGCGATGCCTCCGCCAAACTGTGGGACATCAGAGACGGGATGTGCAGACAGTCCTTTACTGGACATGTCTCCGATATCAATGCCGTCTGCTTCTTCCCGAATGGAAACGCCTTCACGACGGGCTCAGACGACGCCACCTGCAGGCTGTTCGACCTGCGTGCGGATCAGGAGCTGATGATGTACACTCATGATAACATCATCTGCGGCATCACCTCCGTGGCCTTCTCCAAGAGCGGACGC

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041114-167 Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in head; neuromast; and posterior lateral line primordium. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate F. Orthologous to human GNB4 (G protein subunit beta 4).

Ensembl:

ensembl_id ENSDARG00000115383

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008430 False 925 lncRNA 0.46 4 44226200 44238527
TCONS_00007200 False 4276 mRNA 0.39 10 44226200 44447359
TCONS_00007201 True 872 mRNA 0.55 8 44236183 44442536

Neighbor

gene id symbol gene type direction distance location
XLOC_003727 NA coding upstream 29329 44163330 ~ 44196871 (+)
XLOC_003726 FO704721.1 coding upstream 87929 44135351 ~ 44138271 (+)
XLOC_003725 FP016005.2 coding upstream 201322 44024762 ~ 44024878 (+)
XLOC_003724 NA coding upstream 275540 43943882 ~ 43950660 (+)
XLOC_003723 NA coding upstream 403347 43821555 ~ 43822853 (+)
XLOC_003738 NA coding downstream 329 44447688 ~ 44450363 (+)
XLOC_003739 ero1b coding downstream 55051 44502410 ~ 44524932 (+)
XLOC_003740 NA coding downstream 92145 44539504 ~ 44542998 (+)
XLOC_003741 nid1b coding downstream 100850 44548209 ~ 44603789 (+)
XLOC_003742 rbm34 coding downstream 169662 44617021 ~ 44637842 (+)
XLOC_003369 CR854846.2 misc upstream 28103118 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31514204 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31531937 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31540601 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31546172 12679732 ~ 12680028 (+)
XLOC_003722 NA non-coding upstream 408844 43811629 ~ 43817356 (+)
XLOC_003743 NA non-coding downstream 229147 44676506 ~ 44752657 (+)
XLOC_003745 NA non-coding downstream 345144 44792503 ~ 44803305 (+)
XLOC_003747 FO744859.1 non-coding downstream 404115 44851474 ~ 44851593 (+)

Expression


Co-expression Network